Locus 5360

Sequence ID 3R_DroMel_CAF1
Location 14,074,322 – 14,074,416
Length 94
Max. P 0.707042
window8736

overview

Window 6

Location 14,074,322 – 14,074,416
Length 94
Sequences 4
Columns 94
Reading direction forward
Mean pairwise identity 89.62
Mean single sequence MFE -28.68
Consensus MFE -26.06
Energy contribution -26.38
Covariance contribution 0.31
Combinations/Pair 1.10
Mean z-score -1.46
Structure conservation index 0.91
SVM decision value 0.37
SVM RNA-class probability 0.707042
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 14074322 94 + 27905053
CUAUCCAAGCAAAAUGUUUGAAAAUUGGGCGGCCUGGUGGGCGUGGCGCGGCUGUUGCUGCGGCCCAGAAUCGAAUCGCAACAUAAAAAAUUCG
.....(((((.....)))))....((((((.(((.....)))....((((((....))))))))))))...(((((.............))))) ( -29.62)
>DroSec_CAF1 1209 94 + 1
CAAACCAAGCUAAAUGUUUGAAAAUUGGGCGGCCUGGUGGGCGUGGCGCGGCUGUUGCUGCGGCCCAGAAUCGAAUCGCAACAUAAAAAAUUCG
.....(((((.....)))))....((((((.(((.....)))....((((((....))))))))))))...(((((.............))))) ( -29.82)
>DroEre_CAF1 1184 89 + 1
CAAAACAAACAAAAUGUUUGAAAAUUGGGCGGCCUGGUGGGCGUGGUGCGGCUGUUGCUGCGGAACAGA-----AUCGCAACGUAAAGAAUUCG
.....(((((.....)))))........((((((.....)))((..((((((....))))))..))...-----..)))............... ( -24.10)
>DroYak_CAF1 1445 89 + 1
CAAACCAAACUAAAUGUUUGAAAAUUGGGCGGCCUGGUGGGCGUGGCGCGGCUGUUGCUGCGGCACAGA-----AUCGCAACGAAAAGAAUUCG
.....(((((.....)))))........((((((.....)))(((.((((((....)))))).)))...-----..)))..((((.....)))) ( -31.20)
>consensus
CAAACCAAACAAAAUGUUUGAAAAUUGGGCGGCCUGGUGGGCGUGGCGCGGCUGUUGCUGCGGCACAGA_____AUCGCAACAUAAAAAAUUCG
.....(((((.....)))))........((((((.....)))(((.((((((....)))))).)))..........)))............... (-26.06 = -26.38 +   0.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:52:52 2006