Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 1,966,870 – 1,966,966 |
Length | 96 |
Max. P | 0.920854 |
Location | 1,966,870 – 1,966,966 |
---|---|
Length | 96 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 76.84 |
Mean single sequence MFE | -27.80 |
Consensus MFE | -16.92 |
Energy contribution | -16.92 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.94 |
Structure conservation index | 0.61 |
SVM decision value | 1.14 |
SVM RNA-class probability | 0.920854 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1966870 96 - 27905053 ----------------------UCAGA--AGGCUACAGCAGCGGCAGCCAGCUUCAAACUAAUUGUGCAAUUAUUUUUGCAUAAAGUGGCAUAAACAUGACUAGAAGAGGCAUUAUGUGA ----------------------(((.(--.((((...((....)))))).(((((.......((((((((......))))))))..((((((....))).)))...)))))....).))) ( -23.50) >DroVir_CAF1 148636 109 - 1 CUCGGCCA-------GCGAGUGGCAAC--CGGCACC--CGGCAACCGGCAGCUUCAAACUAAUUGUGCAAUUAUUUUUGCAUAAAGUGGCAUAAACAUGGCUAGAAGAGGCAUUAUGCAA ....((((-------.....))))...--..(((.(--(((...))))..(((((.......((((((((......))))))))..((((.........))))...)))))....))).. ( -29.80) >DroPse_CAF1 106873 95 - 1 ----------------------CCAGCUCUGGCAGCAGCCACGGCAG---GCUUCAAACUAAUUGUGCAAUUAUUUUUGCAUAAAGUGGCAUAAACAUGGCUAGAAGAGGCAUUAUGCGA ----------------------...(((.((((....)))).)))..---(((((.......((((((((......))))))))..((((.........))))...)))))......... ( -28.00) >DroGri_CAF1 128300 89 - 1 ----------------------GCAAC-------CC--CGGCAACCGGCAGCUUCAAACUAAUUGUGCAAUUAUUUUUGCAUAAAGUGGCAUAAACAUGGCUAGAAGAGGCAUUAUGCAA ----------------------(((..-------.(--(((...))))..(((((.......((((((((......))))))))..((((.........))))...)))))....))).. ( -25.00) >DroMoj_CAF1 128276 115 - 1 CUCAACCCCACUCCUGCCCGC-UCACC--CGGCAAC--UGCCAACCGGCAGCUUCAAACUAAUUGUGCAAUUAUUUUUGCAUAAAGUGGCAUAAACAUGGCUAGGAGAGGCAUUAUGCAA .......((.((((((((.((-.(((.--......(--((((....)))))...........((((((((......)))))))).)))))........))).))))).)).......... ( -32.50) >DroPer_CAF1 107997 95 - 1 ----------------------CCAGCUCUGGCAGCAGCCACGGCAG---GCUUCAAACUAAUUGUGCAAUUAUUUUUGCAUAAAGUGGCAUAAACAUGGCUAGAAGAGGCAUUAUGCGA ----------------------...(((.((((....)))).)))..---(((((.......((((((((......))))))))..((((.........))))...)))))......... ( -28.00) >consensus ______________________CCAGC__CGGCAAC__CGGCAACAGGCAGCUUCAAACUAAUUGUGCAAUUAUUUUUGCAUAAAGUGGCAUAAACAUGGCUAGAAGAGGCAUUAUGCAA ..................................................(((((..(((..((((((((......)))))))))))(.(((....))).).....)))))......... (-16.92 = -16.92 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:45:27 2006