Locus 536

Sequence ID 3R_DroMel_CAF1
Location 1,966,870 – 1,966,966
Length 96
Max. P 0.920854
window853

overview

Window 3

Location 1,966,870 – 1,966,966
Length 96
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 76.84
Mean single sequence MFE -27.80
Consensus MFE -16.92
Energy contribution -16.92
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.94
Structure conservation index 0.61
SVM decision value 1.14
SVM RNA-class probability 0.920854
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 1966870 96 - 27905053
----------------------UCAGA--AGGCUACAGCAGCGGCAGCCAGCUUCAAACUAAUUGUGCAAUUAUUUUUGCAUAAAGUGGCAUAAACAUGACUAGAAGAGGCAUUAUGUGA
----------------------(((.(--.((((...((....)))))).(((((.......((((((((......))))))))..((((((....))).)))...)))))....).))) ( -23.50)
>DroVir_CAF1 148636 109 - 1
CUCGGCCA-------GCGAGUGGCAAC--CGGCACC--CGGCAACCGGCAGCUUCAAACUAAUUGUGCAAUUAUUUUUGCAUAAAGUGGCAUAAACAUGGCUAGAAGAGGCAUUAUGCAA
....((((-------.....))))...--..(((.(--(((...))))..(((((.......((((((((......))))))))..((((.........))))...)))))....))).. ( -29.80)
>DroPse_CAF1 106873 95 - 1
----------------------CCAGCUCUGGCAGCAGCCACGGCAG---GCUUCAAACUAAUUGUGCAAUUAUUUUUGCAUAAAGUGGCAUAAACAUGGCUAGAAGAGGCAUUAUGCGA
----------------------...(((.((((....)))).)))..---(((((.......((((((((......))))))))..((((.........))))...)))))......... ( -28.00)
>DroGri_CAF1 128300 89 - 1
----------------------GCAAC-------CC--CGGCAACCGGCAGCUUCAAACUAAUUGUGCAAUUAUUUUUGCAUAAAGUGGCAUAAACAUGGCUAGAAGAGGCAUUAUGCAA
----------------------(((..-------.(--(((...))))..(((((.......((((((((......))))))))..((((.........))))...)))))....))).. ( -25.00)
>DroMoj_CAF1 128276 115 - 1
CUCAACCCCACUCCUGCCCGC-UCACC--CGGCAAC--UGCCAACCGGCAGCUUCAAACUAAUUGUGCAAUUAUUUUUGCAUAAAGUGGCAUAAACAUGGCUAGGAGAGGCAUUAUGCAA
.......((.((((((((.((-.(((.--......(--((((....)))))...........((((((((......)))))))).)))))........))).))))).)).......... ( -32.50)
>DroPer_CAF1 107997 95 - 1
----------------------CCAGCUCUGGCAGCAGCCACGGCAG---GCUUCAAACUAAUUGUGCAAUUAUUUUUGCAUAAAGUGGCAUAAACAUGGCUAGAAGAGGCAUUAUGCGA
----------------------...(((.((((....)))).)))..---(((((.......((((((((......))))))))..((((.........))))...)))))......... ( -28.00)
>consensus
______________________CCAGC__CGGCAAC__CGGCAACAGGCAGCUUCAAACUAAUUGUGCAAUUAUUUUUGCAUAAAGUGGCAUAAACAUGGCUAGAAGAGGCAUUAUGCAA
..................................................(((((..(((..((((((((......)))))))))))(.(((....))).).....)))))......... (-16.92 = -16.92 +   0.00) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:45:27 2006