| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 14,069,411 – 14,069,510 |
| Length | 99 |
| Max. P | 0.985301 |
| Location | 14,069,411 – 14,069,510 |
|---|---|
| Length | 99 |
| Sequences | 3 |
| Columns | 114 |
| Reading direction | forward |
| Mean pairwise identity | 70.92 |
| Mean single sequence MFE | -31.23 |
| Consensus MFE | -16.51 |
| Energy contribution | -17.62 |
| Covariance contribution | 1.11 |
| Combinations/Pair | 1.05 |
| Mean z-score | -2.32 |
| Structure conservation index | 0.53 |
| SVM decision value | 2.00 |
| SVM RNA-class probability | 0.985301 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 14069411 99 + 27905053 GCAGUCCUCUC----UUUC-AGACCCCCUCCCCCUUUUUUUCCACGAAAUGUGCUUUUCAUGCGCAG------CAGCGGCGUCGUCACCAU--GCCGUUG--CUGCGAAAAAUC ((((((.....----....-.))).....................((((......)))).)))((((------(((((((((.......))--)))))))--))))........ ( -29.50) >DroSim_CAF1 1290 108 + 1 GCAGUCCUCUCUCUCUCUC-AGACCC-CUCCCCCCCCUUUUCGACGAAAUGUGCUUUUCAUGCGCAGCAGCAGCAGCGGCGUCGUCACCAU--GCCGUUG--CUGCGAAAAAUC ...................-......-..........(((((...(...(((((.......))))).).(((((((((((((.......))--)))))))--)))))))))... ( -33.40) >DroPer_CAF1 8853 113 + 1 UCUGUCUUUUUUCCCCCACCAUCUCCCCAUCCCUCAUUAUUCGUAUAAAUGUGCUUGUCAUGCGCAGCAGCAGCAGCGGCGGCGGCGUCG-UCGUCGUCGUCAUGCGAAAAAUC .......................................(((((((...(((((.......)))))...((....))((((((((((...-.)))))))))))))))))..... ( -30.80) >consensus GCAGUCCUCUCUC_CUCUC_AGACCCCCUCCCCCCAUUUUUCGACGAAAUGUGCUUUUCAUGCGCAGCAGCAGCAGCGGCGUCGUCACCAU__GCCGUUG__CUGCGAAAAAUC .....................................(((((.......(((((.......)))))(((....(((((((.............)))))))...))))))))... (-16.51 = -17.62 + 1.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:52:51 2006