| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 14,045,805 – 14,045,925 |
| Length | 120 |
| Max. P | 0.733088 |
| Location | 14,045,805 – 14,045,925 |
|---|---|
| Length | 120 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 74.33 |
| Mean single sequence MFE | -37.84 |
| Consensus MFE | -21.61 |
| Energy contribution | -21.48 |
| Covariance contribution | -0.13 |
| Combinations/Pair | 1.47 |
| Mean z-score | -1.57 |
| Structure conservation index | 0.57 |
| SVM decision value | 0.43 |
| SVM RNA-class probability | 0.733088 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 14045805 120 + 27905053 CUCUUGGUGGGGCGAAAGUCGGCGGCGGAUGCCUUUGUGGCCUUGGCCACCCUCACCUCAUGCUGUUUCCGCAGCAAUUCCGCCUUCAGGCUGAGCAGCGAGGAAAGAUUCACACUAAUA ...((((((.(((....)))((.(((.((.(((.....))).)).))).))((..((((.((((((....)))))).(((.(((....))).)))....))))..)).....)))))).. ( -46.40) >DroVir_CAF1 39604 120 + 1 AUUUUGUUUGGCCUGAACUCACUGGCCGUCGUCUUGGUCGCUUUUGCCAGUUUGACUUCAUGCUGUUUUCGCUGCAAUUCCGCUUUUAAACUAAGCAGCGAUGAUAAAUUAACGCUGAUU .........((((..........))))((((..(((((.......)))))..)))).(((.((((((.(((((((...................))))))).)))).......))))).. ( -29.42) >DroGri_CAF1 37330 120 + 1 ACUUUAUUGGGUCGAAAUUCAUUGGCCGUCGUCUUGGUGGCCUUGGCCAGUUUGACCUCAUGCUGUUUGCGCUGUAAUUCUGCCUUUAAACUGAGCAGUGAUGAUAAAUUAACGCUGAUU ((..(((.(((((((.....((((((((..(((.....)))..))))))))))))))).)))..))..(((...((((((((((........).))))........))))).)))..... ( -31.00) >DroWil_CAF1 25224 120 + 1 GCUUCCUUGGGCUUAAAUUCGCUGGAUGCCCCCUUUGUGGCCUUGGCCAGCUUAACCUCAUGCUGCUUUCGUAAUAAUUCGGCUUUUAAACUAAGCAGCGAGGAUAAGUUUACGUUUAUU ((.(((...(((........)))))).))........((((....))))(((((.((((..(((((((...(((...........)))....))))))))))).)))))........... ( -32.00) >DroYak_CAF1 36858 120 + 1 CUCUUGGCAGGCCGAAAAUCAUCGGCGGAUGCCUUGGUGGCUUUGGCCACCCUCACCUCAUGCUGUUUCCUCAGCAAUUCCGCCUUCAGGCUGAGCAGCGAGGAGAGAUUUACACUAAUG .....((((.(((((......)))))...))))..((((((....))))))(((.((((.(((((......))))).(((.(((....))).)))....)))).)))............. ( -48.20) >DroAna_CAF1 30791 120 + 1 CUUUUGCUGGGCCGAAAUUCGUUGGCAGCAGCCUUGGUGGCCUUGGCCAGCUUCACCUCAUGCUGCUUCCUUAAUAGUUCUGCUUUUAAGCUAAGUAGCGAGGACAAGUUAACGCUGAUU .....((((.(((((......)))))..)))).(..(((((....)))(((((..((((..(((((((.(((((.((.....)).)))))..)))))))))))..)))))...))..).. ( -40.00) >consensus CUUUUGUUGGGCCGAAAUUCAUUGGCCGACGCCUUGGUGGCCUUGGCCAGCUUCACCUCAUGCUGUUUCCGCAGCAAUUCCGCCUUUAAACUAAGCAGCGAGGAUAAAUUAACGCUGAUU .........((((((...((((.(((....)))...))))..))))))((((((.((((..(((((((........................))))))))))).)))))).......... (-21.61 = -21.48 + -0.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:52:44 2006