Locus 5352

Sequence ID 3R_DroMel_CAF1
Location 14,040,375 – 14,040,471
Length 96
Max. P 0.500000
window8727

overview

Window 7

Location 14,040,375 – 14,040,471
Length 96
Sequences 5
Columns 103
Reading direction forward
Mean pairwise identity 86.74
Mean single sequence MFE -23.55
Consensus MFE -18.85
Energy contribution -19.60
Covariance contribution 0.75
Combinations/Pair 1.08
Mean z-score -1.43
Structure conservation index 0.80
SVM decision value -0.06
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 14040375 96 + 27905053
UUUAACUUUUAGCCAAAAUCUGACAA-------UUGGCCUCGGGCCAAAUAUGAGUUACAUUGCUUUAAUGGACUAAUCGCCAACUGGCUGGCAGUUCCUGCU
........(((((((...........-------((((((...))))))....((((......))))...))).))))..(((....))).(((((...))))) ( -22.70)
>DroSec_CAF1 27793 96 + 1
UUUAACUUUUAGCCAAAAUUAGCCAA-------UUGGCCUCGGCCCAAAUAUGAGUUAAUUUGCUUUAAUGGACUAAUCGCAAACUGGCUGGCAGUUCCUGCU
...((((.(((((((..((((((((.-------..(((....))).......((((......))))...))).))))).......))))))).))))...... ( -21.70)
>DroSim_CAF1 25864 96 + 1
UUUAACUUUUAGCCAAAAUGAGCCAA-------UUGGCCUCGGCCCAAAUAUGAGUUAAUUUGCUUUAAUGGACUAAUCGCCAACUGGCUGGCAGUUCCUGCU
....................(((((.-------(((((...((.(((.....((((......))))...))).))....))))).)))))(((((...))))) ( -24.20)
>DroEre_CAF1 26493 103 + 1
UUAAACUUUCAGCCAAAACUAGCCAAUUUCCAAUUGGCCUCGGCCCAAUUAUGAGUUUUUCUGCUUUAAUGGACUAAUCGCAAACUGGCUGGCGGUUCCUGCU
...((((.(((((((......((((((.....))))))...((.(((.(((.((((......)))))))))).))..........))))))).))))...... ( -25.40)
>DroYak_CAF1 32003 99 + 1
-UUAACUUUCAGCCAAAACGAGCCAAGUUCC---UGGCCUCGUCCCAAUUAUGAAUUUUUCUGCUUUAAUGGACUAAUCGCGAACUGGCUGGCAGUUCCUGCU
-..((((.(((((((....((((((......---))).)))((((..((((...............))))))))...........))))))).))))...... ( -23.76)
>consensus
UUUAACUUUUAGCCAAAAUGAGCCAA_______UUGGCCUCGGCCCAAAUAUGAGUUAAUUUGCUUUAAUGGACUAAUCGCAAACUGGCUGGCAGUUCCUGCU
...((((.(((((((......((((((.....))))))...((.(((.....((((......))))...))).))..........))))))).))))...... (-18.85 = -19.60 +   0.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:52:43 2006