Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 14,021,827 – 14,021,932 |
Length | 105 |
Max. P | 0.713590 |
Location | 14,021,827 – 14,021,932 |
---|---|
Length | 105 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 79.94 |
Mean single sequence MFE | -53.10 |
Consensus MFE | -30.17 |
Energy contribution | -31.40 |
Covariance contribution | 1.23 |
Combinations/Pair | 1.42 |
Mean z-score | -2.00 |
Structure conservation index | 0.57 |
SVM decision value | 0.38 |
SVM RNA-class probability | 0.713590 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 14021827 105 + 27905053 UCCGCCGGGACCCAUUGGACCGCCAUCGC---------CGCCGGGCGGCAUUUGCCCGAGGGGACUGGGCGCUGGUCCGCCAGCAUUGUGGGGUCCA------CCCGGUCCAAUUCCAUU .......(((((...((((((.((((.((---------(((...)))))....((((.((....))))))(((((....)))))...))))))))))------...)))))......... ( -54.80) >DroVir_CAF1 7977 105 + 1 UCCACCGGGUCCCAUCGGGCCGCCAUCAC---------CGCCCGGCGGCAUCUGGCCGAGGGGACUGGGCGCUGGGCCACCGGCAUUAUGUGGUCCG------CCGGGUCCAAUGCCGUU .......((.(((..((((((((......---------.((((..((((.....))))((....))))))(((((....))))).....))))))))------..))).))......... ( -50.70) >DroGri_CAF1 9046 105 + 1 UCCCCCAGGGCCCAUUGGGCCACCAUCAC---------CGCCUGGUGGCAUCUGUGCCAGAGGACUGGGCGCCGGUCCGCCAGCAUUGUGUGGUCCA------CCGGGUCCGAUGCCAUU .......((((((..((((((((...((.---------.((.((((((.(((.(((((((....)).))))).)))))))))))..)).))))))))------..))))))......... ( -50.60) >DroWil_CAF1 8072 120 + 1 UCCGCCUGGGCCCAUUGGACCGCCACCGCCAUCAACUCCGCCAGGCGGCAUUUGACCCAAGGGACUUGGAGCCGGUCCACCAGCAUUGUGUGGACCUCCAGGGCCGGGUCCAAUGCCAUU ...((((((.(......((..((....))..))......)))))))((((((.(((((..((..((((((...((((((((......).))))))))))))).))))))).))))))... ( -54.10) >DroMoj_CAF1 9344 105 + 1 UCCGCCGGGUCCCAUUGGUCCGCCAUCAC---------CGCCCGGCGGCAUCUGGCCGAGUGGACUGGGUGCUGGGCCACCGGCAUUGUGAGGUCCA------CCAGGACCGAUGCCAUU ...(((((((.....(((....)))....---------.)))))))((((((.((((..(((((((.((((((((....))))))))....))))))------)..)).))))))))... ( -59.60) >DroAna_CAF1 6759 105 + 1 UCCACCUGGCCCCAUUGGUCCGCCAUCGC---------CACCGGGCGGCAUCUGGCCGAGGGGACUGGGAGCUGGUCCGCCGGCAUUGUGUGGGCCA------CCGGGUCCGAUGCCAUU ........((((...((((........))---------))..))))((((((..((((.(.((((..(...)..)))).))))).......(((((.------...)))))))))))... ( -48.80) >consensus UCCGCCGGGGCCCAUUGGACCGCCAUCAC_________CGCCCGGCGGCAUCUGGCCGAGGGGACUGGGCGCUGGUCCACCAGCAUUGUGUGGUCCA______CCGGGUCCAAUGCCAUU .......((((((..((((((((((..............((((((...(.(((.....))).).))))))(((((....)))))..)).))))))))........))))))......... (-30.17 = -31.40 + 1.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:52:29 2006