Locus 5341

Sequence ID 3R_DroMel_CAF1
Location 14,017,919 – 14,018,016
Length 97
Max. P 0.562753
window8705

overview

Window 5

Location 14,017,919 – 14,018,016
Length 97
Sequences 6
Columns 98
Reading direction forward
Mean pairwise identity 82.86
Mean single sequence MFE -27.05
Consensus MFE -16.45
Energy contribution -18.32
Covariance contribution 1.86
Combinations/Pair 1.14
Mean z-score -2.20
Structure conservation index 0.61
SVM decision value 0.06
SVM RNA-class probability 0.562753
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 14017919 97 + 27905053
CAAAAUUGUUCAAUUACUGCCAGCGGGAACUGAAAUCUCUUUGAUGAUGUAUGCAAUCAGCAG-AUUGGCUCCAACUGGCGGUGUUGUGAUUGCAAAU
.....(((((((..(((((((((..(((.((..(((((..(((((..........))))).))-))))).)))..)))))))))...)))..)))).. ( -30.00)
>DroPse_CAF1 3816 80 + 1
CCAAAUUGUUCAAUUAU----AACAAAAACAGACAACUUUUCCAAGAGAUCGGCC-CCGCCAG-AUU---UCCA---------GCUGUGAUUGCAAUG
....((((..(((((((----(.(.......((.......))...(((((((((.-..))).)-)))---))..---------).)))))))))))). ( -12.90)
>DroSec_CAF1 3088 98 + 1
CAAAAUUGUUCAAUUACCGCCAGCGGGAACUGAAAUCUCUUUGAUGAUGUAUGCAAUCAGCAGGAUUGGCUCCAACUGGUGGUGUUGUGAUUGCAAAU
.....(((((((..(((((((((..(((.((..(((((..(((((..........)))))..))))))).)))..)))))))))...)))..)))).. ( -32.00)
>DroSim_CAF1 3100 98 + 1
CAAAAUUGUUCAAUUACCGCCAGCGGGAACUGAAAUCUCUUUGAUGAUGUAUGCAAUCAGCAGGAUUGGCUCCAACUGGUGGUGUUGUGAUUGCAAAU
.....(((((((..(((((((((..(((.((..(((((..(((((..........)))))..))))))).)))..)))))))))...)))..)))).. ( -32.00)
>DroEre_CAF1 3092 97 + 1
CAAAAUUGUUCAAUUAUUGCCAGCGGGAACUGAAAUCUCUUUGAUGAUGUAUGCAAUCAGCAG-AUUGGGUCCAACUGGUGGUGUUGUGAUUGCAAAU
.....(((((((..(((..((((..(((.((..(((((..(((((..........))))).))-))).)))))..))))..)))...)))..)))).. ( -27.20)
>DroYak_CAF1 3097 97 + 1
CAAAAUUGUUCAAUUAAUGCCAGCGGGAAGAGAAAUCUCUUUGAUGAUGUAUCCCAUCAGCAG-AUUGGGUCCAACUGGUGGUGUUGUGAUUGCAAAU
.....((((.....((((((((.(((((((((....)))))).....((.((((.(((....)-)).)))).)).))).)))))))).....)))).. ( -28.20)
>consensus
CAAAAUUGUUCAAUUACUGCCAGCGGGAACUGAAAUCUCUUUGAUGAUGUAUGCAAUCAGCAG_AUUGGCUCCAACUGGUGGUGUUGUGAUUGCAAAU
.....(((((((..(((((((((..(((.((((...((...((((..........))))..))..)))).)))..)))))))))...)))..)))).. (-16.45 = -18.32 +   1.86)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:52:22 2006