Locus 534

Sequence ID 3R_DroMel_CAF1
Location 1,964,429 – 1,964,533
Length 104
Max. P 0.632330
window850

overview

Window 0

Location 1,964,429 – 1,964,533
Length 104
Sequences 6
Columns 105
Reading direction reverse
Mean pairwise identity 84.28
Mean single sequence MFE -31.73
Consensus MFE -23.14
Energy contribution -23.83
Covariance contribution 0.70
Combinations/Pair 1.17
Mean z-score -2.18
Structure conservation index 0.73
SVM decision value 0.20
SVM RNA-class probability 0.632330
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 1964429 104 - 27905053
UAUGUAAGUCCAGGAGUGGGAGUGGUGGGGUAAA-AAAGGUUAAAAGGUGCCAUCGUGGCACUCAAAAGCCGGGCAACAUAGUUUAGCACUUUGCUCCGCCAUUG
........((((....))))((((((((((((((-...((((....((((((.....))))))....)))).(....)............)))))))))))))). ( -36.80)
>DroSec_CAF1 122007 104 - 1
UAUGAGAGUCCAGGAGUGGUAGUGGUGGGGUAAA-AAAGGUUAAAAGGUGCCAUCGUGGCACUCCAAAGCCGGGCAACAUAGUUUAGCACUUUGCUCCGCCAUUG
.........(((....)))(((((((((((((((-...((......((((((.....))))))))...((..(((......)))..))..))))))))))))))) ( -35.60)
>DroSim_CAF1 124059 104 - 1
UAUGAGAGUCCAGGAGUGGGAGUGGUGGGGUAAA-AAAGGUUAAAAGGUGCCAUCGUGGCACUCAAAAGCCGGGCAACAUAGUUUAGCACUUUGCUCCGCCAUUG
........((((....))))((((((((((((((-...((((....((((((.....))))))....)))).(....)............)))))))))))))). ( -36.80)
>DroEre_CAF1 124575 85 - 1
----------------UGAAAGU---GGGGUAAA-AAAGGCUAAAAGGUGCCAUCGUGGCACUCAAAAGCCGGGCAACAUAGUUUAGCACUUUGCUCCGCCAUUG
----------------.....((---((((((((-...((((....((((((.....))))))....)))).(....)............))))))))))..... ( -30.20)
>DroYak_CAF1 127695 95 - 1
UCAG-------AGGAGUGGGAGU---UGGGUAAAAAAAGGUUAAAAGGUGCCAUCGUGGCACUCAAAAGCCGGGCAACAUAGUUUAGCACUUUGCUCCGCCAUUG
....-------.((((..((.((---((..(.......((((....((((((.....))))))....)))).(....)...)..)))).).)..))))....... ( -27.50)
>DroAna_CAF1 104814 89 - 1
---------------GUGCCAGGAGCUUGGGAAA-AAAGGUUAAAAGGUGCCAUCGUGGUACUCAAAAGCCGGGCAACAUAGUUUAGCACUUUGCUGCGCCAUUG
---------------...((((....))))....-...((((....((((((.....))))))....))))(((((.((.(((.....))).)).))).)).... ( -23.50)
>consensus
UAUG_______AGGAGUGGGAGUGGUGGGGUAAA_AAAGGUUAAAAGGUGCCAUCGUGGCACUCAAAAGCCGGGCAACAUAGUUUAGCACUUUGCUCCGCCAUUG
....................(((.((((((((((....((((....((((((.....))))))....)))).(....)............)))))))))).))). (-23.14 = -23.83 +   0.70)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:45:24 2006