Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 14,010,490 – 14,010,610 |
Length | 120 |
Max. P | 0.705478 |
Location | 14,010,490 – 14,010,610 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 84.58 |
Mean single sequence MFE | -42.28 |
Consensus MFE | -32.50 |
Energy contribution | -32.94 |
Covariance contribution | 0.44 |
Combinations/Pair | 1.18 |
Mean z-score | -1.73 |
Structure conservation index | 0.77 |
SVM decision value | 0.36 |
SVM RNA-class probability | 0.705478 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 14010490 120 + 27905053 GAUGCGGAGGAAUCUUGCGAGUUCGAAGCCUCGCAAAACUGCGGAAGCCUGUCCACUGGCAGAAGCAUAGAGCUCUUCGGCAUGUUAAGGAAAUCCAGUUGGCUCUUGCCCUCUGGAAUU .((((.(((((.(((((((((........)))))))....((....))(((((....))))).......))..))))).))))..........(((((..(((....)))..)))))... ( -43.90) >DroSec_CAF1 286717 120 + 1 GAUGCGGAGGAAUCUUGCGAGUUGGACACCUCGCAAAAGUGCGGAAGCCUGUCCACUGGCAGAAGCACUGAGCUCUUCGGCAUGUUAAGGAAAUCCAGUUGGCUCUUGCCCUCUGGAAUU .((((.(((((.(((((((((........))))))).(((((....(((........)))....)))))))..))))).))))..........(((((..(((....)))..)))))... ( -47.70) >DroSim_CAF1 292150 120 + 1 GAUGCGGAGGAAUCUUGCGAGUUGGACACCUCGCAAAAGAGCGGAAGCCUGUCCACUGGCAGAAGCACUGAGCUCUUCGGCAUGUUAAGGAAAUCCAGUUGGCUCUUGCCCUCAGGAAUU .((((.(((((.(((.((.(((.(((((..((......))((....)).)))))))).))))).((.....))))))).))))..........(((.(..(((....)))..).)))... ( -40.20) >DroEre_CAF1 273229 120 + 1 GAAGCAGAGGAAUCUUGCGAGUCCGACGCCUCGCAGAAAUGAGGUAGCCUGUCGACGGGCAGCAGCAUAGAGCUUUUGGGCAGAUUUAAGAAAUCUUGUUGGGUCUUUCCUUCAGGUAUU ((((.((((..((((.((((((((((.((((((......)))))).(((((....)))))...(((.....))).)))))).((((.....)))))))).)))))))).))))....... ( -35.20) >DroYak_CAF1 299058 120 + 1 GAUGCGGAGGAAUCCUGAGAGUCGGACGCCUCACAGAAAUGAGGUAGCCUGUCGACAGGCAGAAGCAUAGAGCUCUUGGGCAAGUUGAGAAAGUCUUGUUGGCUUUUUCCCUCAGGAAUA ......((((...((..((((((....((((((......)))))).(((((....))))).........)).))))..))......(((((((((.....)))))))))))))....... ( -44.40) >consensus GAUGCGGAGGAAUCUUGCGAGUUGGACGCCUCGCAAAAAUGCGGAAGCCUGUCCACUGGCAGAAGCAUAGAGCUCUUCGGCAUGUUAAGGAAAUCCAGUUGGCUCUUGCCCUCAGGAAUU .((((.(((((.(((((((((........)))))))..........(((((((....)))))..))...))..))))).))))..........(((((..(((....)))..)))))... (-32.50 = -32.94 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:52:19 2006