| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 13,982,003 – 13,982,114 |
| Length | 111 |
| Max. P | 0.566798 |
| Location | 13,982,003 – 13,982,114 |
|---|---|
| Length | 111 |
| Sequences | 6 |
| Columns | 112 |
| Reading direction | reverse |
| Mean pairwise identity | 81.49 |
| Mean single sequence MFE | -30.58 |
| Consensus MFE | -19.63 |
| Energy contribution | -20.24 |
| Covariance contribution | 0.61 |
| Combinations/Pair | 1.15 |
| Mean z-score | -1.61 |
| Structure conservation index | 0.64 |
| SVM decision value | 0.07 |
| SVM RNA-class probability | 0.566798 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 13982003 111 - 27905053 CUGCAAAUUGCUGGCGUUACGCCCAUC-CCAGGGGGCAUGGCCGCUAUGCGCUGCUCCACAUGCCACAUACAGUCGGCUAAAUGCAAGUGCAUAAAUAACAAUUACAGCUGC ..(((....((((((((((.((((...-.....)))).))).)))((((((((((.......(((((.....)).))).....)).))))))))...........))))))) ( -34.90) >DroVir_CAF1 303989 94 - 1 --CCAAAACGCUCCAGUUACGCCCACCACCAGGGGGCAUGGCAGA-----------CCGCAUGCCAU-UACA----GUUAAAUGCAAGUGCAUAAAUAACAAUUACAGUUGC --....(((...........((((.((....))))))((((((..-----------.....))))))-....----((((.((((....))))...)))).......))).. ( -23.30) >DroSim_CAF1 261892 93 - 1 CUGCAAAUUGCUGGCGUUACGCCCAUC-CCAGGGGGCAUGG------------------CAUGCCACAUACAGGCGGCUAAAUGCAAGUGCAUAAAUAACAAUUACAGCUGC ..(((....(((((((((..((((...-.....)))).(((------------------(.((((.......)))))))))))))..((.........)).....))))))) ( -26.90) >DroEre_CAF1 243717 107 - 1 CUGUAAAUUGCUGGCGUUACGCCCAUC-CCAGGGGGCAUGGCCGCCAUGCGC---UCCACAUGCCAU-UACAGGCGGCUAAAUGCAAGUGCAUAAAUAACAAUUACAGCUGC ((((((.(((..(((((((.((((...-.....)))).))).))))((((((---(.....((((..-....))))((.....)).)))))))......))))))))).... ( -36.00) >DroYak_CAF1 265107 107 - 1 CUGCAAAUUGCUGGCGUUACGCCCAUC-CCAGGGGGCAUGGCCGCCAUGCGC---UCUACAUGCCAU-UACAGGCGGCUAAAUGCAAGUGCAUAAAUAACAAUUACAGCUGC ..(((....(((((((((..((((...-.....)))).(((((((((((.((---.......)))))-....)))))))))))))..((.........)).....))))))) ( -35.40) >DroAna_CAF1 243808 103 - 1 GUGCAAAUUGCCAGAUAUACGCCCAUC-CCAGGGGGCAUGGC----AUAGCA---GCCACAUGCCAU-UACACGCGGCUAAAUGCAAGUGCAUAAAUAACAAUUACAGCGGU .(((.....(((.........(((...-...)))((((((((----......---))))..))))..-.......)))...((((....))))..............))).. ( -27.00) >consensus CUGCAAAUUGCUGGCGUUACGCCCAUC_CCAGGGGGCAUGGCCGC_AUGCGC___UCCACAUGCCAU_UACAGGCGGCUAAAUGCAAGUGCAUAAAUAACAAUUACAGCUGC ..((.....((((.(......(((.......)))((((((...................)))))).......).))))...((((....))))..............))... (-19.63 = -20.24 + 0.61)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:52:15 2006