Locus 5332

Sequence ID 3R_DroMel_CAF1
Location 13,974,586 – 13,974,677
Length 91
Max. P 0.588033
window8692

overview

Window 2

Location 13,974,586 – 13,974,677
Length 91
Sequences 6
Columns 104
Reading direction forward
Mean pairwise identity 70.68
Mean single sequence MFE -25.29
Consensus MFE -8.60
Energy contribution -10.38
Covariance contribution 1.78
Combinations/Pair 1.21
Mean z-score -1.91
Structure conservation index 0.34
SVM decision value 0.11
SVM RNA-class probability 0.588033
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 13974586 91 + 27905053
UCCCAAUUGCCACAUGUUGGUAAUAACAAGUCCGGUU-UGGGCCUUCUACUCG----------AAUGCAAUGC--CAUCCUAUGCCGUCCUCUGCCGUACUUGC
.....(((((((.....)))))))..(((((.((((.-.((((.(((.....)----------)).(((....--.......))).))))...)))).))))). ( -22.80)
>DroSec_CAF1 249802 94 + 1
UCCCAAUUGCCACAUGUUGGUAAUAACAAGUCCGGUUUUGGGCCUUCUACUCG----------GAUGCAAGGCAUCCUACUAUGCCGUCCUCUGCCGUACUUGC
.....(((((((.....)))))))..(((((.((((...((((.........(----------(((((...)))))).........))))...)))).))))). ( -30.77)
>DroSim_CAF1 254475 94 + 1
UCCCAAUUGCCACAUGUUGGUAAUAACAAGUCCGGUUUUGGGCCUUCUACUCG----------GAUGCAAGGCAUCCUACUAUGCCGUCCUCUGCCGUACUUGC
.....(((((((.....)))))))..(((((.((((...((((.........(----------(((((...)))))).........))))...)))).))))). ( -30.77)
>DroEre_CAF1 236527 87 + 1
UCCCAAUUGCCAGCUGUGGGUAAUAACAAGUCCGGUU-UAGGCCUUCUACUCC----------GGUCCAAGCCAUCCUC--C----GUCCCCUGCCGUACUUGC
.((((...(....)..))))......(((((.((((.-.(((...........----------(((....)))......--.----....))))))).))))). ( -18.95)
>DroYak_CAF1 257993 101 + 1
UCCCAAUUGCCAGCUGUGGGUAAUAACAAGUCCGGUU-UAGGCCUUCCACUUGGCCUUCCACUCGGCCAAGCCAUCCAC--ACAGAGGACUCUGCCGUACUUGC
.((((...(....)..))))......(((((.((((.-.((.((((...(((((((........)))))))........--...)))).))..)))).))))). ( -31.44)
>DroAna_CAF1 237597 79 + 1
UCCCAAUUGCCUUCUGUG-GCCCGAUCGGGUCCGGUUUUUAAUAUUC--------------------CUGGGCUUCCUAG--UCCUGUCUUCUUCCACAC--AC
.....((((....(((.(-((((....))))))))....))))....--------------------..(((((....))--)))...............--.. ( -17.00)
>consensus
UCCCAAUUGCCACAUGUGGGUAAUAACAAGUCCGGUU_UGGGCCUUCUACUCG__________GAUGCAAGGCAUCCUAC_AUGCCGUCCUCUGCCGUACUUGC
.....(((((((.....)))))))..(((((.((((....(((...........................................)))....)))).))))). ( -8.60 = -10.38 +   1.78)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:52:10 2006