| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 1,954,030 – 1,954,131 |
| Length | 101 |
| Max. P | 0.699186 |
| Location | 1,954,030 – 1,954,131 |
|---|---|
| Length | 101 |
| Sequences | 3 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 69.02 |
| Mean single sequence MFE | -30.53 |
| Consensus MFE | -13.83 |
| Energy contribution | -15.17 |
| Covariance contribution | 1.34 |
| Combinations/Pair | 1.11 |
| Mean z-score | -2.24 |
| Structure conservation index | 0.45 |
| SVM decision value | 0.35 |
| SVM RNA-class probability | 0.699186 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1954030 101 + 27905053 ACAUA-CACAUCCACAUACACAUCCACAGACACACCCACACUC--AGUGGUGCAACAAUAAAAUACCAGUGAGCCGCUGACGGGGGGUGGCGUC-------UUUGUGGGUG .....-..............(((((((((((.(((((...(((--((((((...((............))..)))))))).)..)))))..)))-------..)))))))) ( -36.80) >DroYak_CAF1 117537 105 + 1 -CAUCCCACAUCCACAUCCACAUCCACAGAAACACCCAUACUC--GGUGGUGCAACAAUAAAAUACCAGAGAGCCGCUGACGGUGGGUAGCGCCUUCC---UUUAUGGGUG -...............................((((((((...--((.(((((..........((((.....((((....)))).)))))))))..))---..)))))))) ( -28.20) >DroAna_CAF1 95717 102 + 1 ----A-CACAUUCUGGAACAGA---ACCCACCCACCCACACUCCCGCAAGUGCAACAAUAAAAUACCAGCGAGCCGCUGACUUG-GGUGGUUAUUCUUUUUUUUGGAGCUG ----.-....(((..(((.(((---(.(((((((....((((......))))..............(((((...)))))...))-)))))...))))...)))..)))... ( -26.60) >consensus _CAUA_CACAUCCACAUACACAUCCACAGACACACCCACACUC__GGUGGUGCAACAAUAAAAUACCAGAGAGCCGCUGACGGGGGGUGGCGACU______UUUGUGGGUG ................................((((((((.......(((((...........)))))....((((((.......))))))............)))))))) (-13.83 = -15.17 + 1.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:45:23 2006