Locus 5329

Sequence ID 3R_DroMel_CAF1
Location 13,961,670 – 13,961,768
Length 98
Max. P 0.981788
window8687

overview

Window 7

Location 13,961,670 – 13,961,768
Length 98
Sequences 3
Columns 102
Reading direction reverse
Mean pairwise identity 80.60
Mean single sequence MFE -44.47
Consensus MFE -36.13
Energy contribution -36.47
Covariance contribution 0.34
Combinations/Pair 1.12
Mean z-score -2.37
Structure conservation index 0.81
SVM decision value 1.90
SVM RNA-class probability 0.981788
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 13961670 98 - 27905053
AUGCGCCUGUCGCUGCU----GGCAGCCCAGCCGGCCUGCUUCUUUCCUCGAGGAUCGGGAUCGGGAUCGGAAUCGGAAUCGGGAUCGGUGGCAACAGGUGA
...(((((((.((..((----((...(((..((((((((.((((.(((....)))..)))).)))).))))....(....)))).))))..)).))))))). ( -42.30)
>DroSec_CAF1 232478 95 - 1
AUGCGCCUGUCGCUGCUGGCUGGCAGCCCAGCCGGCCUGCUCCUCUUUU-GGGGAUCGGGAUCGGGAUCGGAAU------CGGAAUCGGUGGCAACAGGUGA
...(((((((.((((((((((((....)))))))))(((.(((((....-))))).))).(((((..(((....------)))..)))))))).))))))). ( -46.80)
>DroSim_CAF1 240912 83 - 1
AUGCGCCUGUCGCUGCUGGCUGGCAGCCCAGCCGGCCUGCUCCUCUUUU-GGGGAUCGGGAU------------------CGGAAUCGGUGGCAACAGGUGA
...(((((((.((..((((((((....)))))(((((((.(((((....-))))).)))).)------------------))....)))..)).))))))). ( -44.30)
>consensus
AUGCGCCUGUCGCUGCUGGCUGGCAGCCCAGCCGGCCUGCUCCUCUUUU_GGGGAUCGGGAUCGGGAUCGGAAU______CGGAAUCGGUGGCAACAGGUGA
...(((((((.((..(((.(((((......)))))((((.(((((.....))))).))))..........................)))..)).))))))). (-36.13 = -36.47 +   0.34)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:52:05 2006