Locus 5325

Sequence ID 3R_DroMel_CAF1
Location 13,953,296 – 13,953,387
Length 91
Max. P 0.897999
window8680

overview

Window 0

Location 13,953,296 – 13,953,387
Length 91
Sequences 6
Columns 104
Reading direction forward
Mean pairwise identity 77.04
Mean single sequence MFE -27.23
Consensus MFE -20.47
Energy contribution -21.03
Covariance contribution 0.56
Combinations/Pair 1.33
Mean z-score -1.43
Structure conservation index 0.75
SVM decision value 1.00
SVM RNA-class probability 0.897999
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 13953296 91 + 27905053
UCAACACACCGGUGACCACGUCCAGCGAUAUUCCCUCGUUCUUCGGACCCACCACCGUCGUGGAGCCACCGCCCAUUACUGGUGAGUACUA-------------
...((.((((((((.....(((((((((.......)))))....))))....))))((.((((.((....)))))).)).)))).))....------------- ( -26.80)
>DroVir_CAF1 272865 93 + 1
UUAACACGCCGGUAACCACCUCCAGCGAUAUACCCUCAUUCUUUGGGCCAUCCACAGUGGUAGAACCGCCGCCAAUUACUGGUAAGUACGGCA-----------
.......((((((....))).((((..((...(((.........))).........(((((......)))))..))..)))).......))).----------- ( -22.60)
>DroGri_CAF1 268641 93 + 1
UCAAUACGCCGGUGACCACAUCCAGCGAUAUACCCUCAUUCUUUGGGCCAUCGACAGUGGUGGAACCACCACCAAUAACCGGUAAGUAAAGCG-----------
....(((((((((...........(((((...(((.........)))..)))).).((((((....)))))).....))))))..))).....----------- ( -27.20)
>DroEre_CAF1 215650 104 + 1
UCAACACGCCGGUGACCACGUCCAGCGAUAUUCCCUCGUUCUUCGGACCCACCACCGUGGUGGAGCCACCGCCCAUUACUGGUGAGUACAGCUUUAAAUGAACC
...((.(((((((((....(((((((((.......)))))....))))........((((((....))))))...))))))))).))................. ( -30.30)
>DroYak_CAF1 241202 104 + 1
UGAACACGCCGGUGACCACGUCCAGCGAUAUUCCCUCGUUUUUCGGCCCCAGCACCGUGGUGGAACCACCCCCCAUUACUGGUGAGUACAGCUUUAAGUAAACA
((.((.((((((((.....(((.(((((.......)))))....))).....))))(((((((.........))))))).)))).)).)).............. ( -25.00)
>DroMoj_CAF1 308416 93 + 1
UCAAUACACCGGUGACCACGUCGAGCGACAUUCCGUCGUUCUUUGGCCCAUCCACAGUGGUUGAACCACCGCCAAUAACCGGUGAGUGUAGAA-----------
......((((((((((...)))(((((((.....))))))).(((((.........((((.....)))).)))))..))))))).........----------- ( -31.50)
>consensus
UCAACACGCCGGUGACCACGUCCAGCGAUAUUCCCUCGUUCUUCGGACCAACCACAGUGGUGGAACCACCGCCAAUUACUGGUGAGUACAGCA___________
...((.(((((((((...((...(((((.......)))))...))...........((((((....))))))...))))))))).))................. (-20.47 = -21.03 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:51:59 2006