| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 13,949,941 – 13,950,034 |
| Length | 93 |
| Max. P | 0.687335 |
| Location | 13,949,941 – 13,950,034 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 105 |
| Reading direction | forward |
| Mean pairwise identity | 84.68 |
| Mean single sequence MFE | -17.20 |
| Consensus MFE | -15.00 |
| Energy contribution | -15.00 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.58 |
| Structure conservation index | 0.87 |
| SVM decision value | 0.32 |
| SVM RNA-class probability | 0.687335 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 13949941 93 + 27905053 GCUCCGUGUCGCAUGCAACUUGCAUGUUUUCUAUCUAU----GUAUCUGCAAGAUACUUUUUCCUUCCAACACAC--------ACACAUAUUUGACUAAUGAUCG .....((((.((((((.....))))))...........----(((((.....)))))............))))..--------...................... ( -15.40) >DroPse_CAF1 309915 96 + 1 --UUCGUGUCGCAUGCAACUUGCAUGUUUUCUAUCUAU----GUAUCUGCAAGAUACUUUUACCC-CCAACACACAGAUACACAUACA-AUUUGACUAAUGAUC- --.(((((((((((((.....))))))..........(----(((((((................-........))))))))......-....)))..))))..- ( -18.46) >DroEre_CAF1 212311 95 + 1 GCUCCGUGUCGCAUGCAACUUGCAUGUUUUCUAUCUAU----GUAUCUGCAAGAUACUUUUACCCUCCAACACACACA----CU--CACACUUGACUAAUGAUCG .....((((.((((((.....))))))...........----(((((.....)))))............)))).....----..--................... ( -15.40) >DroYak_CAF1 237914 101 + 1 GCUCCGUGUCGCAUGCAACUGGCAUGUUUUCUAUCUAUGUAUGUAUCUGCGAGAUACUUUUACCCUCCAACACACACA----CACACACAUUUGACUAAUGAUCG .....((((.((((((.....))))))...........(((.(((((.....)))))...)))......)))).....----......((((.....)))).... ( -17.00) >DroAna_CAF1 210796 96 + 1 --UCCGUGUCGCAUGCAACUUGCAUGUUUUCUAUCUAU----GUAUCUGCAAGAUACUUUUACUCCUC---ACACACUCACAGACGCCCAGUUGACUAAUGAUCG --...(((((((((((.....))))))...........----(((((.....)))))...........---...........))))).................. ( -18.50) >DroPer_CAF1 302442 96 + 1 --UUCGUGUCGCAUGCAACUUGCAUGUUUUCUAUCUAU----GUAUCUGCAAGAUACUUUUACCC-CCAACACACAGAUACACAUACA-AUUUGACUAAUGAUC- --.(((((((((((((.....))))))..........(----(((((((................-........))))))))......-....)))..))))..- ( -18.46) >consensus __UCCGUGUCGCAUGCAACUUGCAUGUUUUCUAUCUAU____GUAUCUGCAAGAUACUUUUACCCUCCAACACACACA____CACACACAUUUGACUAAUGAUCG .....((((.((((((.....))))))...............(((((.....)))))..............)))).............................. (-15.00 = -15.00 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:51:58 2006