Locus 5323

Sequence ID 3R_DroMel_CAF1
Location 13,943,556 – 13,943,650
Length 94
Max. P 0.699569
window8678

overview

Window 8

Location 13,943,556 – 13,943,650
Length 94
Sequences 6
Columns 95
Reading direction reverse
Mean pairwise identity 92.16
Mean single sequence MFE -21.08
Consensus MFE -17.22
Energy contribution -17.17
Covariance contribution -0.05
Combinations/Pair 1.04
Mean z-score -2.19
Structure conservation index 0.82
SVM decision value 0.35
SVM RNA-class probability 0.699569
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 13943556 94 - 27905053
UCGUUUAUAU-UUUAUUUCAGUUAAUUUAUGAGCAUCAUAAUAUGCUUUAUGAUCUUGGCAUGUUGCCGUAAAUUGCUGCAGUCAACAGCAAAAA
..(((((((.-.(((.......)))..)))))))(((((((......)))))))...(((.....))).....((((((.......))))))... ( -22.10)
>DroPse_CAF1 301215 94 - 1
UUCUAUAGGU-UUUAUUUCAUUUAAUUUAUGAGCAUCAUAAUAUGCUUUAUGAUCUUGGCAUCUUGCCGUAAAUUGUUGCAGUCAACAGCAGCAU
..........-............((((((((((.(((((((......))))))))))(((.....))))))))))(((((........))))).. ( -20.60)
>DroSim_CAF1 222221 94 - 1
UCGUUUAUAU-UUUAUUUCAGUUAAUUUAUGAGCAUCAUAAUAUGCUUUAUGAUCUUGGCAUGUUGCCGUAAAUUGCUGCAGUCAACAGCGAAAA
..(((((((.-.(((.......)))..)))))))(((((((......)))))))...(((.....))).....((((((.......))))))... ( -21.80)
>DroEre_CAF1 206066 94 - 1
UCGUUUAUAUAUUUAUUUCAGUUAAUUUAUGAGCAUCAUAAUAUGCUUUAUGAUCUUGGCAUGUUGCCGUAAAUUGCUGCAGUCAACAGCAA-AA
..(((((((.(((.((....)).))).)))))))(((((((......)))))))...(((.....))).....((((((.......))))))-.. ( -20.40)
>DroYak_CAF1 228384 94 - 1
UCGCUUAUAU-UUUAUUUCAGUUAAUUUAUGAGCAUCAUAAUAUGCUUUAUGAUCUUGGCAUGUUGCCGUAAAUUGCUGCAGUCAACAGAAAAAA
..(((((((.-.(((.......)))..)))))))(((((((......))))))).(((((.(((.((........)).))))))))......... ( -21.00)
>DroPer_CAF1 291920 94 - 1
UUCUAUAGGU-UUUAUUUCAUUUAAUUUAUGAGCAUCAUAAUAUGCUUUAUGAUCUUGGCAUCUUGCCGUAAAUUGUUGCAGUCAACAGCAGCAU
..........-............((((((((((.(((((((......))))))))))(((.....))))))))))(((((........))))).. ( -20.60)
>consensus
UCGUUUAUAU_UUUAUUUCAGUUAAUUUAUGAGCAUCAUAAUAUGCUUUAUGAUCUUGGCAUGUUGCCGUAAAUUGCUGCAGUCAACAGCAAAAA
.......................((((((((((.(((((((......))))))))))(((.....))))))))))((((.......))))..... (-17.22 = -17.17 +  -0.05)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:51:57 2006