Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 13,931,209 – 13,931,304 |
Length | 95 |
Max. P | 0.691415 |
Location | 13,931,209 – 13,931,304 |
---|---|
Length | 95 |
Sequences | 6 |
Columns | 106 |
Reading direction | reverse |
Mean pairwise identity | 91.54 |
Mean single sequence MFE | -17.36 |
Consensus MFE | -15.97 |
Energy contribution | -16.13 |
Covariance contribution | 0.17 |
Combinations/Pair | 1.00 |
Mean z-score | -1.18 |
Structure conservation index | 0.92 |
SVM decision value | 0.33 |
SVM RNA-class probability | 0.691415 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 13931209 95 - 27905053 GGCUGACGUCAUAAAUGCAUAAAUGCAAGCCGCGAUGACAUAAAUUGCAUUUGAAUAUUGGCCAACAGCGGAA----AA-A------AUAGGAAAAACAAACCAUA (((..(..(((....((((....))))....(((((.......)))))...)))...)..)))..........----..-.------................... ( -17.10) >DroSec_CAF1 193198 102 - 1 GGCUGACGUCAUAAAUGCAUAAAUGCAAGCCGCGAUGACAUAAAUUGCAUUUGAAUAUUGGCCAACAGCGCAA----AAAAAAAAGAAUAGGAAAAACAAACCAUA (((..(..(((....((((....))))....(((((.......)))))...)))...)..)))..........----............................. ( -17.10) >DroSim_CAF1 208081 96 - 1 GGCUGACGUCAUAAAUGCAUAAAUGCAAGCCGCGAUGACAUAAAUUGCAUUUGAAUAUUGGCCAACAGCGCAA----AAAA------AUAGGAAAAACAAACCAUA (((..(..(((....((((....))))....(((((.......)))))...)))...)..)))..........----....------................... ( -17.10) >DroEre_CAF1 193848 100 - 1 GGCUGACGUCAUAAAUGCAUAAAUGCAAGCCGCGAUGACAUAAAUUGCAUUUGAAUAUUGGCCAACAGCGGAAUAGGAAAA------AUAGGAAAAACAAACCAUA (((..(..(((....((((....))))....(((((.......)))))...)))...)..)))..................------................... ( -17.10) >DroYak_CAF1 214638 94 - 1 GGCUGACGUCAUAAAUGCAUGAAUACAAGCCGCGAUGACAUAAAUUGCAUUUGAAUAUUGGCCAACAGCGG------AAAA------AUAGGAAAAACAAACCGUA (((..(..(((.....((.((....)).)).(((((.......)))))...)))...)..)))....((((------....------..............)))). ( -17.57) >DroAna_CAF1 193095 99 - 1 GGCUGACGUCAUAAAUGCAUAAAUGCAAGCGGCGAUGACAUAAAUUGCAUUUGAAUAUUGGCCAACAGCAGAGC-GGAAAA------AAAGGAAACCCAAACCAUA (((..(..(((....((((....))))....(((((.......)))))...)))...)..)))...........-((....------...(....).....))... ( -18.20) >consensus GGCUGACGUCAUAAAUGCAUAAAUGCAAGCCGCGAUGACAUAAAUUGCAUUUGAAUAUUGGCCAACAGCGGAA____AAAA______AUAGGAAAAACAAACCAUA (((..(..(((....((((....))))....(((((.......)))))...)))...)..)))........................................... (-15.97 = -16.13 + 0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:51:54 2006