Locus 5320

Sequence ID 3R_DroMel_CAF1
Location 13,923,743 – 13,923,836
Length 93
Max. P 0.759427
window8674

overview

Window 4

Location 13,923,743 – 13,923,836
Length 93
Sequences 6
Columns 93
Reading direction forward
Mean pairwise identity 93.19
Mean single sequence MFE -29.82
Consensus MFE -24.75
Energy contribution -27.00
Covariance contribution 2.25
Combinations/Pair 1.12
Mean z-score -2.09
Structure conservation index 0.83
SVM decision value 0.50
SVM RNA-class probability 0.759427
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 13923743 93 + 27905053
GAUCGAGGCCUAACGGCGCUAUUUCCGCUUCAAAUUCAAUUAAAAUUUUGGCUGCGAAGCGACUAAGUGUCAAGCGUGAAGCGGAAGGGAUUG
((((.(((((....))).)).(((((((((((..................(((....)))(((.....))).....))))))))))).)))). ( -31.80)
>DroSec_CAF1 185888 93 + 1
GAUCGAGGCCUAACGGCGCUAUUUCCGCUUCAAAUUCAAUUAAAAAUUUGGCUGCGAUGCGACUAAGUGUCAAGCGUGAAGCGGAAGGGAAUG
..((.(((((....))).)).(((((((((((....(((........)))(((..(((((......))))).))).))))))))))).))... ( -32.30)
>DroSim_CAF1 200847 93 + 1
GAUCGAGGCCUAACGGCGCUAUUUCCGCUUCAGAUUCAAUUAAAAUUUUGGCUGCGAAGCGACUAAGUGUCAAGCGUGAAGCGGAAGGGAAUG
..((.(((((....))).)).(((((((((((..................(((....)))(((.....))).....))))))))))).))... ( -29.80)
>DroEre_CAF1 186770 93 + 1
GAUCGAGGCCUAACGGCGCUAUUUCCGCUUCGAAUUCAAUUAAAAUUUUGGCUGCGAAGCGAUUGGGUGUCAAGCGUGAAGCGGAAGGGAUUG
((((.(((((....))).)).(((((((((((....(((........)))(((..((.((......)).)).))).))))))))))).)))). ( -30.20)
>DroYak_CAF1 207178 93 + 1
GAUCGAGGCCUAACGGCGCUAUUUCCGCUUCGAAUUCAAUUAAAAUUUUGUCUGCGAAGCGAUUGGGUGUCAAGCGUGAAGCAGAAGGGAUUG
...(((..(((...((((((.....(((((((....(((........)))....)))))))....))))))..((.....))...)))..))) ( -26.60)
>DroAna_CAF1 185492 93 + 1
GAUCGAGGCCUAACGGUGCUAUUUCCGCUUCAAAUUCAAUUAAAAUCUUGGCUGCGAAGCGACCAAAUGUCAACCAUGAAGCGGAAGGGAUUG
((((...(((....)))....(((((((((((..................(((....)))(((.....))).....))))))))))).)))). ( -28.20)
>consensus
GAUCGAGGCCUAACGGCGCUAUUUCCGCUUCAAAUUCAAUUAAAAUUUUGGCUGCGAAGCGACUAAGUGUCAAGCGUGAAGCGGAAGGGAUUG
((((.(((((....))).)).(((((((((((..................(((....)))(((.....))).....))))))))))).)))). (-24.75 = -27.00 +   2.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:51:53 2006