Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 1,949,846 – 1,949,953 |
Length | 107 |
Max. P | 0.635952 |
Location | 1,949,846 – 1,949,953 |
---|---|
Length | 107 |
Sequences | 3 |
Columns | 107 |
Reading direction | forward |
Mean pairwise identity | 83.07 |
Mean single sequence MFE | -23.22 |
Consensus MFE | -14.27 |
Energy contribution | -16.33 |
Covariance contribution | 2.06 |
Combinations/Pair | 1.08 |
Mean z-score | -2.26 |
Structure conservation index | 0.61 |
SVM decision value | 0.21 |
SVM RNA-class probability | 0.635952 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1949846 107 + 27905053 UGGCUAAAAGACAUUCACAAGCAAUUGCUGCUAUGAAGUUUGGCCCAGCAUGACAUUACACAUUUAAUGCUUUUGUUGAUAAAGAAUAUGACUUAUUAAUGUUAAUA .(((((((.....((((..((((.....)))).)))).)))))))(((((.(((((((......))))).)).)))))..........((((........))))... ( -21.90) >DroSec_CAF1 107744 99 + 1 UGGCUAAAAGGCAUUCACAAGCAAUUG---CUAUGCAGUUUGGCCUAGCAUACUAUUACAUAUGUAUUGCUAUUGUUGAUAAAGAAAAUAACUCAUUAAUAU----- .(((((((..((((...(((....)))---..))))..)))))))((((((((..........))).))))).(((((((..((.......)).))))))).----- ( -23.20) >DroSim_CAF1 109233 99 + 1 UGGCUAAAAUGCAUUCACAAGCAAUUG---CUAUGCAGUUUGGCCUAGCAUGACAUGACACACCUAAUGCUAUUGUUGAUAAAGAAAAUGUCUCAUUAAUAU----- .(((((((.(((((...(((....)))---..))))).)))))))((((((...............)))))).(((((((..(((.....))).))))))).----- ( -24.56) >consensus UGGCUAAAAGGCAUUCACAAGCAAUUG___CUAUGCAGUUUGGCCUAGCAUGACAUUACACAUCUAAUGCUAUUGUUGAUAAAGAAAAUGACUCAUUAAUAU_____ .(((((((..((((...(((....))).....))))..)))))))(((((...(((((......)))))....)))))............................. (-14.27 = -16.33 + 2.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:45:22 2006