Locus 532

Sequence ID 3R_DroMel_CAF1
Location 1,949,846 – 1,949,953
Length 107
Max. P 0.635952
window848

overview

Window 8

Location 1,949,846 – 1,949,953
Length 107
Sequences 3
Columns 107
Reading direction forward
Mean pairwise identity 83.07
Mean single sequence MFE -23.22
Consensus MFE -14.27
Energy contribution -16.33
Covariance contribution 2.06
Combinations/Pair 1.08
Mean z-score -2.26
Structure conservation index 0.61
SVM decision value 0.21
SVM RNA-class probability 0.635952
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 1949846 107 + 27905053
UGGCUAAAAGACAUUCACAAGCAAUUGCUGCUAUGAAGUUUGGCCCAGCAUGACAUUACACAUUUAAUGCUUUUGUUGAUAAAGAAUAUGACUUAUUAAUGUUAAUA
.(((((((.....((((..((((.....)))).)))).)))))))(((((.(((((((......))))).)).)))))..........((((........))))... ( -21.90)
>DroSec_CAF1 107744 99 + 1
UGGCUAAAAGGCAUUCACAAGCAAUUG---CUAUGCAGUUUGGCCUAGCAUACUAUUACAUAUGUAUUGCUAUUGUUGAUAAAGAAAAUAACUCAUUAAUAU-----
.(((((((..((((...(((....)))---..))))..)))))))((((((((..........))).))))).(((((((..((.......)).))))))).----- ( -23.20)
>DroSim_CAF1 109233 99 + 1
UGGCUAAAAUGCAUUCACAAGCAAUUG---CUAUGCAGUUUGGCCUAGCAUGACAUGACACACCUAAUGCUAUUGUUGAUAAAGAAAAUGUCUCAUUAAUAU-----
.(((((((.(((((...(((....)))---..))))).)))))))((((((...............)))))).(((((((..(((.....))).))))))).----- ( -24.56)
>consensus
UGGCUAAAAGGCAUUCACAAGCAAUUG___CUAUGCAGUUUGGCCUAGCAUGACAUUACACAUCUAAUGCUAUUGUUGAUAAAGAAAAUGACUCAUUAAUAU_____
.(((((((..((((...(((....))).....))))..)))))))(((((...(((((......)))))....)))))............................. (-14.27 = -16.33 +   2.06) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:45:22 2006