| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 13,922,562 – 13,922,656 |
| Length | 94 |
| Max. P | 0.519241 |
| Location | 13,922,562 – 13,922,656 |
|---|---|
| Length | 94 |
| Sequences | 6 |
| Columns | 106 |
| Reading direction | reverse |
| Mean pairwise identity | 76.61 |
| Mean single sequence MFE | -33.33 |
| Consensus MFE | -20.33 |
| Energy contribution | -20.42 |
| Covariance contribution | 0.08 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.32 |
| Structure conservation index | 0.61 |
| SVM decision value | -0.03 |
| SVM RNA-class probability | 0.519241 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 13922562 94 - 27905053 ------CGACAUGAG---GUGAGGACUCACCUGUGCCAUUGCUGCCGAACCAGAGGGCGACUAGGUCCUCACCUGGCGGCGUAUGGUGGUGAUAAG---GAUUGCC ------.......((---((((....))))))..(((((((((((((.....((((((......))))))...)))))))).)))))((..((...---.))..)) ( -38.90) >DroVir_CAF1 231496 91 - 1 ------AUAUUGGAU---UGGAUGACUCACCUGCUCCAUUGCUGCCAAACCAAAGGGCCACGAGGUCCUCGCUUGGCGGCGUGUG---AUGAUAAU---GGUUCCC ------.....(((.---((((.(.(......))))))..((((((((.(...((((((....)))))).).)))))))).....---........---...))). ( -27.20) >DroPse_CAF1 268955 98 - 1 GGU-G-AAGGAUGAA---UGGUGGACUCACCUGUGCCAUUGCUGCCAAACCAAAGGGCCACUAGGUCCUCGCUUGGCGGCGUAUGAUGAUGAUAUG---GAUUGCC ((.-.-(.((.....---.((((....))))....))...((((((((.(...((((((....)))))).).))))))))................---..)..)) ( -32.30) >DroWil_CAF1 171064 97 - 1 ------GGAUUUGUU---GGUAACACUCACCUGUCCCAUUGCUGCCAAACCAAAGGGCCACAAGGUCCUCACUUGGCGAUGUAUGGUGAUGAUAGUGAUGAUUACC ------.........---(((((((.((((.((((((((...((((((.....((((((....))))))...))))))....)))).))))...)))))).))))) ( -29.90) >DroMoj_CAF1 263986 94 - 1 ------GGAGGGGAUUGGUGGAGGACUCACCUGUUCCAUUGCUACCAAACCAAAGGGCCACGAGGUCCUCGCUUGGCGGCGUGUG---GUGAUAGU---GAUUGCC ------....(((((.(((((.....))))).)))))...((..((((.(...((((((....)))))).).))))..))....(---(..((...---.))..)) ( -32.50) >DroAna_CAF1 184378 97 - 1 ---UGACAAACUAAG---GUGAUGACUCACCUGAGCCAUUGCUGCCGAACCAAAGGGCCACUAGGUCCUCACUUGGCGGCGUAUGGUGGUGAUAAU---GAUUGCC ---..........((---((((....))))))..((((((((((((((.....((((((....))))))...))))))))).)))))((..((...---.))..)) ( -39.20) >consensus ______AGAGAUGAU___GGGAGGACUCACCUGUGCCAUUGCUGCCAAACCAAAGGGCCACUAGGUCCUCACUUGGCGGCGUAUGGUGAUGAUAAU___GAUUGCC ....................................((((((((((((.....((((((....))))))...))))))))).)))..................... (-20.33 = -20.42 + 0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:51:52 2006