| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 13,917,747 – 13,917,865 |
| Length | 118 |
| Max. P | 0.523299 |
| Location | 13,917,747 – 13,917,865 |
|---|---|
| Length | 118 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 91.49 |
| Mean single sequence MFE | -27.29 |
| Consensus MFE | -20.08 |
| Energy contribution | -20.96 |
| Covariance contribution | 0.88 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.72 |
| Structure conservation index | 0.74 |
| SVM decision value | -0.02 |
| SVM RNA-class probability | 0.523299 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 13917747 118 + 27905053 ACAUUCCUUAAUAUUUAGGAGCUGUUUUUGCCAAAUACCAUUUGCAGAUAGACUCCAUUUGCAUUUCGAAAGAAACCUGGUUUU--UUUAUGAAGCCGUCGAAUGUUCGAGAAGUCAAUU ((((((...........(((((((((..(((.((((...)))))))))))).))))....((.((((....))))...((((((--.....)))))))).)))))).............. ( -25.90) >DroSec_CAF1 179622 120 + 1 ACAUUCCUUAAUAUUUAGGAGCUGUUUUUGCCAAAAACCAUUUGCAGAUAGACUCCAUUUGCAUUUCGAAACAAACCUGGUUUUUUUUUAUGAAGCCAGCGAAUGUUCGAGAAGUCAAUU .................(((((((((..(((.(((.....))))))))))).))))..((((.(((((((.((..(((((((((.......)))))))).)..))))))))).).))).. ( -29.00) >DroSim_CAF1 194546 118 + 1 ACAUUCCUUAAUAUUUAGGAGCUGUUUUUGCCAAACACCAUUUGCAGAUAGACUCCAUUUGCAUUUCGAAACAAACCUGGUUUU--UUUAUGAAGCCAUCGAAUGUUCGAGAAGUCAAUU .................(((((((((..(((.((......)).)))))))).))))..((((.(((((((.......(((((((--.....))))))).......))))))).).))).. ( -26.04) >DroEre_CAF1 180558 117 + 1 ACAUUCCUUAAUAUUGAGGAGCCGUUUUAGCCAAACGCCAUUUGCAGAUAGACUCCAUUUGGAUUUCGAAACGAACCAGGUUU---CUUAUGAAACCGUCGAAUGUUCGAGAAGUCAGCA ....((((((....))))))(((((((.....))))).............((((((....)))(((((((.(((....(((((---(....)))))).)))....))))))).))).)). ( -30.80) >DroYak_CAF1 200994 117 + 1 ACAUUCCUUAAUAUUUAGGAGCCGUUUUUGACAAACACCAUUUGCAGAUAGACUCCAUAUGGAUUUCGAAACAAACCUGGUUU---UUUAUGAAGCCGUCGAAUGUUCGAGAAAUCAAUA .................((((.(...((((.((((.....))))))))..).)))).....((((((...........(((((---(....)))))).((((....)))))))))).... ( -24.70) >consensus ACAUUCCUUAAUAUUUAGGAGCUGUUUUUGCCAAACACCAUUUGCAGAUAGACUCCAUUUGCAUUUCGAAACAAACCUGGUUUU__UUUAUGAAGCCGUCGAAUGUUCGAGAAGUCAAUU .................(((((((((..((.((((.....))))))))))).)))).......(((((((.......(((((((.......))))))).......)))))))........ (-20.08 = -20.96 + 0.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:51:51 2006