Locus 5317

Sequence ID 3R_DroMel_CAF1
Location 13,911,765 – 13,911,855
Length 90
Max. P 0.950564
window8671

overview

Window 1

Location 13,911,765 – 13,911,855
Length 90
Sequences 6
Columns 92
Reading direction reverse
Mean pairwise identity 93.31
Mean single sequence MFE -25.98
Consensus MFE -22.17
Energy contribution -22.17
Covariance contribution 0.00
Combinations/Pair 1.13
Mean z-score -2.33
Structure conservation index 0.85
SVM decision value 1.40
SVM RNA-class probability 0.950564
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 13911765 90 - 27905053
GCCUGUGAGUGCAUCGGAUCGUUAAGUUGCCUGAAGAUAUUCAAUUUGAUCACUUUGCUGCUU--CUUAAGCAUUGUUAGAUGCAGUUAUUA
....((((.((((((.((((((......)).((((....))))....))))((..((((....--....))))..))..)))))).)))).. ( -22.70)
>DroSec_CAF1 173550 90 - 1
GCCUGUGAGUGCAUCGGAUCGUUAAGUUGCCUGAAGAUAUUCAAUUUGGGAACUUUGCUGCUU--CUUAAGCAUUGUUAGAUGCAGUUAUUA
....((((.((((((.....((.(((((.((((((....))))....)).))))).))((((.--....))))......)))))).)))).. ( -24.30)
>DroSim_CAF1 184596 90 - 1
GCCUGUGAGUGCAUCGGAUCGUUAAGUUGCCUGAAGAUAUUCAAUUUGGGCACUUUGCUGCUU--CUUAAGCAUUGUUAGAUGCAGUUAUUA
....((((.((((((.....((.((((.(((..((.........))..))))))).))((((.--....))))......)))))).)))).. ( -26.40)
>DroEre_CAF1 174706 90 - 1
GCCUGUGAGUGCAUCGGAUCGUUAAGUUGCCCGAAGAUAUUCAAUUUGGGCACUUUGCUGCUU--CUUAAGCAUUGUUAGAUGCAGUUAUUA
....((((.((((((.....((.((((.(((((((.........))))))))))).))((((.--....))))......)))))).)))).. ( -28.90)
>DroYak_CAF1 194421 90 - 1
GUCUGUGAGUGCAUCGGAUCGUUAAAUUGCCUGAAAAUAUUCAAUUUGGGCACUUUGCUGCCU--CUUAAGCAUUGUUAGAUGCAGUUAUUA
....((((.((((((.............(((..((.........))..)))((..((((....--....))))..))..)))))).)))).. ( -24.40)
>DroAna_CAF1 174186 92 - 1
GCCUGUGAGUGCAUCUGAUCGUUAUAUGGCCCAAAGAAAUUCAAUUUGGGCACUUUGCUUCUUCUCUUAGGCAUUGUUAGAUGCAGUUAUUA
....((((.((((((((((.........(((((((.........)))))))....(((((........)))))..)))))))))).)))).. ( -29.20)
>consensus
GCCUGUGAGUGCAUCGGAUCGUUAAGUUGCCUGAAGAUAUUCAAUUUGGGCACUUUGCUGCUU__CUUAAGCAUUGUUAGAUGCAGUUAUUA
....((((.((((((.............(((((((.........)))))))((..((((..........))))..))..)))))).)))).. (-22.17 = -22.17 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:51:50 2006