Locus 5316

Sequence ID 3R_DroMel_CAF1
Location 13,911,477 – 13,911,571
Length 94
Max. P 0.566085
window8670

overview

Window 0

Location 13,911,477 – 13,911,571
Length 94
Sequences 6
Columns 103
Reading direction forward
Mean pairwise identity 86.03
Mean single sequence MFE -30.18
Consensus MFE -23.36
Energy contribution -23.87
Covariance contribution 0.50
Combinations/Pair 1.15
Mean z-score -2.06
Structure conservation index 0.77
SVM decision value 0.06
SVM RNA-class probability 0.566085
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 13911477 94 + 27905053
A--UGAAGCAGAUGAACGGC------GAUGGACAAAUGAUCGCCUGCUUUAUGAUGUGCUAUCAAUGGCCUAUCAAUGGCGGCGA-UUUUUGUUCUGUCCGCU
.--..............(((------(..(((((((.(((((((.(((...(((((.((((....)))).)))))..))))))))-)))))))))....)))) ( -32.80)
>DroSim_CAF1 184308 94 + 1
A--UGAAGCAGAUGAACGGC------GAUGGACAAAUGAUCGCCUACUUUAUGAUGUGCUAUCAAUGGCCUAUCAAUGGCGGCGA-UUUUUGUUCUGUCCGCU
.--..............(((------(..(((((((.(((((((..((...(((((.((((....)))).)))))..)).)))))-)))))))))....)))) ( -28.30)
>DroEre_CAF1 174418 94 + 1
A--UGGAGCAGAUAAACGGC------GAUGGACAAAUGAUCGCCUGCUUUAUGAUGUGCUAUCAAUGGCCUAUCAAUGGCGGCGA-UUUUUGUUCUGUCCGCU
.--..............(((------(..(((((((.(((((((.(((...(((((.((((....)))).)))))..))))))))-)))))))))....)))) ( -32.80)
>DroYak_CAF1 194131 96 + 1
UGCAGAUGCAGAUGAACGGC------GAUGGACAAAUGAUCGCCUGCUUUAUGAUGUGCUAUCAAUGGCCUAUCAAUGGCGGCGA-UUUUUGUUCUGUCCGCU
(((....))).......(((------(..(((((((.(((((((.(((...(((((.((((....)))).)))))..))))))))-)))))))))....)))) ( -34.80)
>DroAna_CAF1 173898 92 + 1
G------CCCGAAGAGCGGCUC----AAUCGACAAAUGAUCACCUGUUUUAUGAUGUGCUAUCAAUGGCCUAUCAAUGGCGGCGA-UUUUUGUUCUAUCCGCU
.------.......(((((...----....((((((.((((.((.(((...(((((.((((....)))).)))))..))))).))-))))))))....))))) ( -24.30)
>DroPer_CAF1 243853 96 + 1
A--U-----GGAUGAACGGUUGAACGGAACGACAAACGAUUGCCUGCUUUAUGAUGUGCUAUCAAUGGCCUAUCAAUGGCGGUGAGUUUUUGUUCUAUCGGCU
.--.-----........((((((..(((((((.((((..(..((.(((...(((((.((((....)))).)))))..)))))..)))))))))))).)))))) ( -28.10)
>consensus
A__UGAAGCAGAUGAACGGC______GAUGGACAAAUGAUCGCCUGCUUUAUGAUGUGCUAUCAAUGGCCUAUCAAUGGCGGCGA_UUUUUGUUCUGUCCGCU
..........................((((((((((...(((((.(((...(((((.((((....)))).)))))..))))))))...)))).)))))).... (-23.36 = -23.87 +   0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:51:49 2006