Locus 5315

Sequence ID 3R_DroMel_CAF1
Location 13,904,803 – 13,904,893
Length 90
Max. P 0.967524
window8669

overview

Window 9

Location 13,904,803 – 13,904,893
Length 90
Sequences 5
Columns 90
Reading direction reverse
Mean pairwise identity 91.67
Mean single sequence MFE -23.84
Consensus MFE -20.16
Energy contribution -21.28
Covariance contribution 1.12
Combinations/Pair 1.10
Mean z-score -1.87
Structure conservation index 0.85
SVM decision value 1.61
SVM RNA-class probability 0.967524
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 13904803 90 - 27905053
AAAGGAUCAGGCGGCGGCUGAAAUACAGCUGCCACUGUUAAAUCAGGUAAGCCCUUUUGGCCAAAUUACUUCACACCUCCGUACUGACAA
...(((.(((..((((((((.....)))))))).))).......(((((((((.....)))....))))))......))).......... ( -25.60)
>DroSec_CAF1 166981 84 - 1
AAGGGAUCAGG------CUGAAAUACAGCUGCCACUGCUAAACCAGGUAAGCCCUUUUGGCCAAAUUACUUCACACCUCCGUAGUGACAA
.((((....((------(((.....))))).)).))((((((..(((.....))))))))).........((((((....)).))))... ( -17.60)
>DroSim_CAF1 177556 90 - 1
AAAGGAUCAGGCGGCGGCUGAAAUACAGCUGCCACUGCUAAAUCAGGUAAGCCCUUUUGGCCAAAUUACUUCACACCUCCGUAGUGACAA
...((.((((((((((((((.....)))))))).(((......)))....)))....)))))........((((((....)).))))... ( -26.50)
>DroEre_CAF1 167699 90 - 1
AAAGGAUCAGGCGGCGGCUGAAAUACAGCUGCCACUGCUAAAUCAGGUAAGCCCUUUGGGCCAAAUUACUUCACACCUCCACACUGACAA
...(((.(((..((((((((.....)))))))).))).......((((((((((...))))....))))))......))).......... ( -27.80)
>DroYak_CAF1 187517 90 - 1
AAAGGAUCAGGCGGCAGCAGAGGUACAGCUGCCACUGCUAAAUCAGGUAAUCCCUUUUGGCCAAAUUACUUCACACCUCCAUACUGACAA
...(((...((.((((((.........)))))).))((((((..(((.....)))))))))................))).......... ( -21.70)
>consensus
AAAGGAUCAGGCGGCGGCUGAAAUACAGCUGCCACUGCUAAAUCAGGUAAGCCCUUUUGGCCAAAUUACUUCACACCUCCGUACUGACAA
...(((...((.((((((((.....)))))))).))((((((...((....))..))))))................))).......... (-20.16 = -21.28 +   1.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:51:48 2006