Locus 5311

Sequence ID 3R_DroMel_CAF1
Location 13,883,601 – 13,883,694
Length 93
Max. P 0.580688
window8663

overview

Window 3

Location 13,883,601 – 13,883,694
Length 93
Sequences 6
Columns 100
Reading direction forward
Mean pairwise identity 77.84
Mean single sequence MFE -26.93
Consensus MFE -16.36
Energy contribution -16.56
Covariance contribution 0.20
Combinations/Pair 1.15
Mean z-score -1.44
Structure conservation index 0.61
SVM decision value 0.09
SVM RNA-class probability 0.580688
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 13883601 93 + 27905053
C--UCGGUGUUGAUCGCCAUGUUCGUGG-CACGUACGUGUCUGGCAUUUCAAAAAAUGCCAA--CUGA--GCCAAAUGAGUUGUCCAACGAUCUAACACA
.--...(((((((((..(((((((..((-(((....)))))((((((((....)))))))).--..))--))...))).(((....))))))).))))). ( -29.50)
>DroVir_CAF1 186182 96 + 1
CUGUUGGUGUUGAUCGCCAUGUUCGACG-GCUGUACGUGUUUGGCAUUUCAAUUGA-UCACA--ACGAUCGGCAAAUGAGUUGUCCAAUGAUCUAACACA
......(((((((((((((....(.(((-......))))..)))).........((-((...--..))))(((((.....)))))....)))).))))). ( -24.70)
>DroEre_CAF1 147852 92 + 1
C--UCGGUGUUGAUCGCCAUGUUCGUGG-CUCGUACGUGUCUGGCAUUUGAAG-AAGGCCAA--CUGA--GCCAAAUGAGUUGUCCAACGAUCUAACACA
.--...(((((((((((((..(.((((.-....)))).)..))))........-..((.(((--((.(--......).))))).))...)))).))))). ( -27.90)
>DroWil_CAF1 141961 84 + 1
C---UGGUGUUGAUCGGCAUGUUCGACG-UUUGUACGUGUUUGGCAUUUACAAUGAA-------C-----GUCAAAUGAGUUGUCCAACCAUCUUACACA
.---.(((((((..((((.((((.((((-((((((.(((.....))).))))...))-------)-----))).)))).))))..))).))))....... ( -21.50)
>DroMoj_CAF1 217244 97 + 1
AUGUUGGUGUUGAUCGGCAUGUUCGACGGGCCGUACGUGUUUGGCAUUUCAAUUGA-UUGAA--ACGAUCGACAAAUGAGUUGUCCAAUGAUCUAACACA
......((((((((((((((((.((......)).))))))((((((.((((.(((.-((((.--....))))))).)))).)).))))))))).))))). ( -28.90)
>DroAna_CAF1 149591 91 + 1
C--U-GGUGUUGAUCGCCAUGUUCGUGG-CCCGUACGUGUCUGGCAUUUUGA---GUGCCAAAGCCUG--GCCAAAUGAGUUGUCCAACGAUCUAACACA
.--.-.((((((((((((((....))))-)..((..((...((((((.....---))))))..)).((--(.(((.....))).))))))))).))))). ( -29.10)
>consensus
C__UUGGUGUUGAUCGCCAUGUUCGACG_CCCGUACGUGUCUGGCAUUUCAAAUGA_GCCAA__CCGA__GCCAAAUGAGUUGUCCAACGAUCUAACACA
......((((((((((.(((((.((......)).)))))..(((((.((((.........................)))).)).))).))))).))))). (-16.36 = -16.56 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:51:42 2006