Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 13,880,009 – 13,880,115 |
Length | 106 |
Max. P | 0.774185 |
Location | 13,880,009 – 13,880,115 |
---|---|
Length | 106 |
Sequences | 5 |
Columns | 115 |
Reading direction | reverse |
Mean pairwise identity | 82.64 |
Mean single sequence MFE | -37.62 |
Consensus MFE | -23.91 |
Energy contribution | -24.23 |
Covariance contribution | 0.32 |
Combinations/Pair | 1.08 |
Mean z-score | -2.07 |
Structure conservation index | 0.64 |
SVM decision value | 0.54 |
SVM RNA-class probability | 0.774185 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 13880009 106 - 27905053 AGCUGCGAUCGGCAGCCU-CGAGGAGAAGCACUUUUGGGUAGCCAAGAGGAGCCCGGU--------UUGGAGCCAGGUUGGAGCCAGGAGGCUUGCCCAGGAGUGCAUAAAAUUU .(((((.....)))))((-(...)))..((((((((((((((((.....(.((((((.--------.((....))..)))).)))....))).)))))))))))))......... ( -45.80) >DroSec_CAF1 143900 93 - 1 AGCUGCGAUCGGCAGCCUUGGAGGAGCAGCACUUUUG-GUAGC-AAGAGGA--------------------GCCAGGUUGCAGCCGAGAGGCUUGCCCAGGAGUGCAUAAAAUUU .(((((.....)))))............(((((((((-(..((-((.....--------------------((......)).(((....)))))))))))))))))......... ( -34.30) >DroSim_CAF1 152588 94 - 1 AGCUGCGAUCGGCAGCCUUCGAGGAGGAGCACUUUUG-GUAGCCAAGAGGA--------------------GCCAGGUUGGAGCCGAGAGGCUUGCCCAGGAGUGCAUAAAAUUU .(((((.....)))))(((....)))..(((((((((-(.((((....((.--------------------.((.....))..))....))))...))))))))))......... ( -37.60) >DroEre_CAF1 144093 102 - 1 AGCUGCGAUCGGCAGCCC-CGAGGAGGAGCACUUUUG-GAAGCCAAGAGGAGCCAGGAG----------GAGCCAGG-UGGAGCCAGGAGGAUUGCCCAGGAGUGCAUAAAAUUU .(((((.....))))).(-(.....)).(((((((((-(...(((...((..((....)----------)..))...-)))..((....)).....))))))))))......... ( -35.00) >DroYak_CAF1 160425 112 - 1 AGCAGCGAUCGGCAGCCC-CGAGGAGAAGUACUUUUG-GCAGCCAAGAGGAGCCAGGAGGAGCUAUGAGGAGCCAGG-UGGAGCCAGGAGGAUUGCCCAGGAGUGCAUAAAAUUU ....(((.((((((((((-(.......(((.((((((-((..((....)).))))))))..)))....((..((...-.))..)).)).)).)))))...)).)))......... ( -35.40) >consensus AGCUGCGAUCGGCAGCCU_CGAGGAGAAGCACUUUUG_GUAGCCAAGAGGAGCC_GG____________GAGCCAGGUUGGAGCCAGGAGGCUUGCCCAGGAGUGCAUAAAAUUU .(((((.....)))))............(((((((((.((((((....((......................)).((......))....)).)))).)))))))))......... (-23.91 = -24.23 + 0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:51:42 2006