Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 1,949,622 – 1,949,733 |
Length | 111 |
Max. P | 0.757513 |
Location | 1,949,622 – 1,949,733 |
---|---|
Length | 111 |
Sequences | 6 |
Columns | 119 |
Reading direction | reverse |
Mean pairwise identity | 77.04 |
Mean single sequence MFE | -29.17 |
Consensus MFE | -17.34 |
Energy contribution | -16.53 |
Covariance contribution | -0.80 |
Combinations/Pair | 1.19 |
Mean z-score | -1.66 |
Structure conservation index | 0.59 |
SVM decision value | 0.49 |
SVM RNA-class probability | 0.757513 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1949622 111 - 27905053 -UAUCUCUUGAUUCUGGGGGCUCGGUUCUAGCAAACUUGUCACUGGAGCA-------GAAGUUUCUGAAUGCAUUCUCGGCGCCAACUUCUUGGUGCGAAAAGUUGGCGCAAAAUACUU -.......((((((.((..((((.(((((((...........))))))).-------).)))..)))))).))......((((((((((.(((...))).))))))))))......... ( -34.30) >DroPse_CAF1 90740 97 - 1 ----------------------CAAUGCGAACAAACUUGUCACUAAAGCCGAGGCUGGAACUUUUUGAAUGCAUUCUUGGCGUUAACUUCUUGGUGCGAAAAGUUGGCGCAAAAUACUU ----------------------.((((((..((((....((.....(((....))).))....))))..))))))....((((((((((.(((...))).))))))))))......... ( -23.60) >DroEre_CAF1 110413 90 - 1 ----------------------CGGUUCCAGCAAACUUGUCACUGGAGCA-------GAAGUUUCUGAAUGCAUUCUCGGCGCCAACUUUUUGGUGCGAAAAGUUGGCGCAAAAUACUU ----------------------(((((((((...........)))))))(-------(((((........)).))))))((((((((((((((...))))))))))))))......... ( -32.20) >DroYak_CAF1 113271 112 - 1 UCAUUUCUAGAUUCUGGGGGCUCGGUUGCAGCAAACUUGUCACUGGAGCA-------GAAGUUUCUGAAUGCAUUCUCGGCGCCAACUUUUUGGUGCGAAAAGUUGGCGCAAAAUACUU .(((((..(((..((....(((((((.((((.....)))).))).)))).-------..))..))))))))........((((((((((((((...))))))))))))))......... ( -36.60) >DroAna_CAF1 91943 90 - 1 ----------------------CCUUUUUGGCAAACUUGUCACUGGAGCA-------GAACUUUCUGAAUGCAUUCUCGGCGCUAACUUCUUGGUGCGAAAAGUUGGCGCAAAAUACUU ----------------------.((((.(((((....)))))..))))((-------((....))))............((((((((((.(((...))).))))))))))......... ( -22.70) >DroPer_CAF1 91435 97 - 1 ----------------------CAAUGCGAACAAACUUGUCACUAAAGCCGAGGCUGGAAGUUUUUGAAUGCAUUCUUGGCGUUAACUUCUUGGUGCGAAAAGUUGGCGCAAAAUACUU ----------------------...((((....(((((..(((((((((....))).((((((....(((((.......)))))))))))))))))....)))))..))))........ ( -25.60) >consensus ______________________CGGUUCCAGCAAACUUGUCACUGGAGCA_______GAAGUUUCUGAAUGCAUUCUCGGCGCCAACUUCUUGGUGCGAAAAGUUGGCGCAAAAUACUU .....................................(((....(((((...........))))).....)))......((((((((((.(((...))).))))))))))......... (-17.34 = -16.53 + -0.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:45:22 2006