| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 13,870,352 – 13,870,454 |
| Length | 102 |
| Max. P | 0.544553 |
| Location | 13,870,352 – 13,870,454 |
|---|---|
| Length | 102 |
| Sequences | 6 |
| Columns | 109 |
| Reading direction | forward |
| Mean pairwise identity | 75.62 |
| Mean single sequence MFE | -37.20 |
| Consensus MFE | -19.52 |
| Energy contribution | -20.65 |
| Covariance contribution | 1.13 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.64 |
| Structure conservation index | 0.52 |
| SVM decision value | 0.02 |
| SVM RNA-class probability | 0.544553 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 13870352 102 + 27905053 CAGGCCCACAAUGUUGCAAGAUCUUACGGAU-------CGCAUCGCUGUGCUGCACAGCACAGAUCUAAGUGGGCCAACUUCUGGCCGCCGGCGCAGCGGGUUGAGGCU ..(((((((...(.(((..((((.....)))-------)))).).(((((((....)))))))......)))))))..((((.(.((((.......)))).).)))).. ( -43.30) >DroSec_CAF1 134060 105 + 1 CAGGCGCACAAUGUUGCAAGAUCUUUCGGAU--CGCAUCGCAUCGCUGUGCUGC--AGCACAGAUCUAAGUCGGCCAACUGCUGGCCGCCGGCGCAGCGGAUUGAGGCU .....(((......)))..((((.....)))--)((.(((..(((((((((((.--.((...(((....)))(((((.....))))))))))))))))))..))).)). ( -40.40) >DroSim_CAF1 142608 107 + 1 CAGGCGCACAAUGUUGCAAGAUCUUUCGGAUCUCGCAUCGCAUCGCUGUGCUGC--AGCACAGAUCUAAGUUGGCCAACUGCUGGCCGGCGGCGCAGCGGGUUGAGGCU ..(((.(.(((((.(((.(((((.....))))).))).)...((((((((((((--(((..........)))(((((.....))))).)))))))))))))))).)))) ( -44.80) >DroEre_CAF1 134439 98 + 1 CAGGCCCACAGUGUUGCAAGAUCUUUGG-------CAUCGCAUCGCUGUGCUGC--A-CACAGAUCUAAGUCGGCCAACUUCAGGCCGCCGGCGCAGCGGGCGCA-GCU ...((((.(.((((((..((((((.(((-------((.((((....)))).)))--.-)).))))))..(.(((((.......)))))))))))).).))))...-... ( -39.60) >DroYak_CAF1 150853 97 + 1 CAGCCACACAAUGUUGCAAGAUCUUUGG--------AUCGCAUCGCCGUGGUGC--A-CACAGAUCUAAGUCGGCCAACUUCUGGCCGCCGGCGCAGCGGGAUCA-GCU .(((.......((((((..((((....)--------))).....((((((....--.-)))........(.((((((.....)))))).))))))))))......-))) ( -33.92) >DroAna_CAF1 136169 92 + 1 -AA--ACACAAUAUUGCAAGAUCGCUUAGAU-------CGCUGCCCC--CCCACAUCCCACAAUUGUAAGUCGGCCAACACUUGGCCCCUGGCU----GGCAACU-ACU -..--..........(((.((((.....)))-------)..)))...--..............((((.(((((((((.....)))))...))))----.))))..-... ( -21.20) >consensus CAGGCACACAAUGUUGCAAGAUCUUUCGGAU_____AUCGCAUCGCUGUGCUGC__AGCACAGAUCUAAGUCGGCCAACUUCUGGCCGCCGGCGCAGCGGGUUCA_GCU ..........................................(((((((((((......((........)).(((((.....)))))..)))))))))))......... (-19.52 = -20.65 + 1.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:51:41 2006