Locus 5308

Sequence ID 3R_DroMel_CAF1
Location 13,869,881 – 13,869,993
Length 112
Max. P 0.577080
window8660

overview

Window 0

Location 13,869,881 – 13,869,993
Length 112
Sequences 4
Columns 112
Reading direction reverse
Mean pairwise identity 90.33
Mean single sequence MFE -26.25
Consensus MFE -22.52
Energy contribution -22.90
Covariance contribution 0.38
Combinations/Pair 1.16
Mean z-score -1.41
Structure conservation index 0.86
SVM decision value 0.09
SVM RNA-class probability 0.577080
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 13869881 112 - 27905053
AUUUUAUAACUUUGUCUGGAGUUUAGCUGUUGGCAUUUGGAGAUUUGAUAAGCUCUUCUGUUUUCAUUGUUUGAUUUAGCAUGCAAUAAGUUCUAGCUGCUAAUGCCAGCGU
.............(.((((...(((((.(((((.((((((((((..((........)).))))))(((((.((......)).))))))))).))))).)))))..))))).. ( -25.80)
>DroSec_CAF1 133585 112 - 1
AUUUUAUAACUUUGUCUGGAGUUUAGCUGUUGGCAUUUAGAGAUUUGAUAGGCUCUUCUGUUUUCAUUGUUUGAUUUAGCAUGCAAUAAGUUCUAGCAGCUAAUGCCAGCGU
.............(.((((...(((((((((((.(((((..((...((((((....)))))).)).((((.((......)).))))))))).)))))))))))..))))).. ( -30.50)
>DroSim_CAF1 142130 112 - 1
AUUUUAUAACUUUGUCUAGAGUUUAGCUGUUGGCAUUUAGAGAUUUGAUAAGCUCUUCUGUUUUCACUGUUUGAUUUAGCAUGCAAUAAGUUCUAGCAGCUAAUGCCAGCGU
.......(((((......))))).....(((((((((.((.....(((.((((......)))))))(((((.((((((........))))))..)))))))))))))))).. ( -24.30)
>DroYak_CAF1 150356 111 - 1
GUUUUAUAGCUUUUUGAAGAGUUUAGCUGUUGGAACUUAGAGAUAUGGUAAGCUCUUCUGUUUUCAUUGU-UGACUCAGCGUGCAAUAAGUUCUAGCUGCUAACACCACCGU
........(((((....)))))(((((.(((((((((((.....((((.((((......)))))))).((-((...))))......))))))))))).)))))......... ( -24.40)
>consensus
AUUUUAUAACUUUGUCUAGAGUUUAGCUGUUGGCAUUUAGAGAUUUGAUAAGCUCUUCUGUUUUCAUUGUUUGAUUUAGCAUGCAAUAAGUUCUAGCAGCUAAUGCCAGCGU
...............((((...(((((((((((.(((((((((...((........))...)))).((((.((......)).))))))))).)))))))))))..))))... (-22.52 = -22.90 +   0.38)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:51:40 2006