| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 13,866,891 – 13,866,988 |
| Length | 97 |
| Max. P | 0.827155 |
| Location | 13,866,891 – 13,866,988 |
|---|---|
| Length | 97 |
| Sequences | 6 |
| Columns | 105 |
| Reading direction | reverse |
| Mean pairwise identity | 79.38 |
| Mean single sequence MFE | -28.31 |
| Consensus MFE | -13.34 |
| Energy contribution | -14.87 |
| Covariance contribution | 1.53 |
| Combinations/Pair | 1.08 |
| Mean z-score | -2.56 |
| Structure conservation index | 0.47 |
| SVM decision value | 0.70 |
| SVM RNA-class probability | 0.827155 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 13866891 97 - 27905053 ACCCGGUUGGCCUUUUGUAUUGCGCCUUGUAAUAUAUUUUAUUAACAAUAAAAUGUUAAGUGCCACAAGCAAGGGCACAG--CG------GCGGAUCGGGGUAUU .(((((((.(((...((((((((.....)))))))).....((((((......))))))(((((.(......))))))..--.)------)).)))))))..... ( -35.60) >DroVir_CAF1 164662 90 - 1 GUCGCAUUGGCCUUUUGUAAUGCGCCUUGUAAUAUAUUUUAUUAACAAUAAAAUGUUAAGUGCCACAAGGCGUGAUGCAG--GG------UCUG-------CAGU ...(((..(((((..((((.((((((((((.(((((((((((.....)))))))))...))...)))))))))).)))))--))------))))-------)... ( -29.80) >DroSec_CAF1 130394 97 - 1 ACCCGGUUGGCCUUUUGUAUUGCGCCUUGUAAUAUAUUUUAUUAACAAUAAAAUGUUAAGUGCCACAAGCAGGGGGUUAG--GG------ACGGAUCGGGGUAUU .(((((((.(((((.......((.((((((...........((((((......)))))).........)))))).)).))--))------.).)))))))..... ( -28.85) >DroSim_CAF1 136406 97 - 1 ACCCGGUUGGCCUUUUGUAUUGCGCCUUGUAAUAUAUUUUAUUAACAAUAAAAUGUUAAGUGCCACAAGCAAGGGGACAG--GG------ACGGAUCGGGGUAUU .(((((((.(((((.((((((((.....)))))))).....((((((......))))))((.((.(......))).))))--))------.).)))))))..... ( -28.40) >DroWil_CAF1 126134 105 - 1 ACUGAGUUGGCCUUUUGUAUUGCGCCUUGUAAUAUAUUUUAUUAACAAUAAAAUGUUAAGUGCCACAAGGCAAGAGAGAGAGCAAGGCAUAUGGAUAAAGGAAUG ...........(((((((..((.(((((((...(((((((((.....)))))))))....((((....)))).........))))))).))...))))))).... ( -24.80) >DroAna_CAF1 133051 85 - 1 GUCUGGUUGGCCUUUUGUAUUGCGCCUUGUAAUAUAUUUUAUUAACAAUAAAAUGUUAAGUGCCACAAGGAAGGG-------------------AUCGG-GCAUG ((((((((..((((((....((.((((((....(((((((((.....))))))))))))).))))...)))))))-------------------)))))-))... ( -22.40) >consensus ACCCGGUUGGCCUUUUGUAUUGCGCCUUGUAAUAUAUUUUAUUAACAAUAAAAUGUUAAGUGCCACAAGCAAGGGGACAG__GG______ACGGAUCGGGGUAUU .(((((((((((...((((((((.....)))))))).....((((((......))))))).))).(.......)...................)))))))..... (-13.34 = -14.87 + 1.53)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:51:39 2006