Locus 5302

Sequence ID 3R_DroMel_CAF1
Location 13,837,301 – 13,837,400
Length 99
Max. P 0.979848
window8651

overview

Window 1

Location 13,837,301 – 13,837,400
Length 99
Sequences 6
Columns 99
Reading direction reverse
Mean pairwise identity 96.84
Mean single sequence MFE -34.40
Consensus MFE -31.15
Energy contribution -31.65
Covariance contribution 0.50
Combinations/Pair 1.00
Mean z-score -1.83
Structure conservation index 0.91
SVM decision value 1.85
SVM RNA-class probability 0.979848
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 13837301 99 - 27905053
GAUGAUGAAGUUGGUGGUGCUGUAGUGAGUUAACAACAACGCUAGUGGUGCUGCUGUGGGUGGUGGUGCUUGCUGCAGUGCAGGGUGCUGCCACGGUCA
.....(((...(((..(..((.(((((............)))))...(..((((.(..(((......)))..).))))..)..))..)..)))...))) ( -34.60)
>DroSec_CAF1 109040 99 - 1
GAUGAUGAAGUUGGUGGUGCUGUAGUGAGUUAACAACAACGCUAGUGGUGCUGCUGUGGGUGGUGGUGCUUGCUGCUGUGCAUGGUGCUGCCACGGUCA
..((((......((..(..((((((((............))))).)))..)..))....((((..(..(((((......))).))..)..)))).)))) ( -34.20)
>DroSim_CAF1 112866 99 - 1
GAUGAUGAAGUUGGUGGUGCUGUAGUGAGUUAACAACAACGCUAGUGGUGCUGCUGUGGGUGGUGGUGCUUGCUGCGGUGCAUGGUGGUGCCACGGUCA
..((((........(((((.(((.((......)).))).)))))((((..(..(((((.((.(..((....))..).)).)))))..)..)))).)))) ( -36.30)
>DroEre_CAF1 109399 99 - 1
GAUGAUGAAGUUGGUGGUGCUGUAGUGAGUUAACAACAACGCUAGUGGUGCUGCUGUGGGUGGUGGUGCUUGCUGCGGUGCAGGGUGCAGCCACGGUCA
.........(.(.((((((((((((..(((...((....((((.(..(.....)..).)))).))..)))..)))))))((.....)).))))).).). ( -32.70)
>DroYak_CAF1 117547 99 - 1
GAUGAUGAAGUUGGUGGUGCUGUAGUGAGUUAACAACAACGCUAGUGGUGCUGCUGUGGGUGGUGGUGCUUGCUGCGGUGCAGGGUGCUGCCACGGUCA
..((((......((..(..((((((((............))))).)))..)..))....((((..(..(((((......))).))..)..)))).)))) ( -34.20)
>DroAna_CAF1 107115 99 - 1
GAUGAUGAAGUUGGUGGUGCUGUAGUGAGUUAACAACAACGCUAGUGGUGGUGCUGUUGGUGGUGGUGCUUGCUGUGGUGCAGGGUGCUGCCACUGUCA
(((..((.(((.....(..(..(((..(((...((....((((((..(.....)..)))))).))..)))..)))..)..).....)))..))..))). ( -34.40)
>consensus
GAUGAUGAAGUUGGUGGUGCUGUAGUGAGUUAACAACAACGCUAGUGGUGCUGCUGUGGGUGGUGGUGCUUGCUGCGGUGCAGGGUGCUGCCACGGUCA
..((((......(((((((((((((((............))))).))))))))))....((((((((((((((......))).))))))))))).)))) (-31.15 = -31.65 +   0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:51:31 2006