| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 13,823,970 – 13,824,066 |
| Length | 96 |
| Max. P | 0.983289 |
| Location | 13,823,970 – 13,824,066 |
|---|---|
| Length | 96 |
| Sequences | 6 |
| Columns | 113 |
| Reading direction | forward |
| Mean pairwise identity | 72.92 |
| Mean single sequence MFE | -22.25 |
| Consensus MFE | -8.44 |
| Energy contribution | -9.50 |
| Covariance contribution | 1.06 |
| Combinations/Pair | 1.29 |
| Mean z-score | -2.46 |
| Structure conservation index | 0.38 |
| SVM decision value | 1.58 |
| SVM RNA-class probability | 0.965111 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 13823970 96 + 27905053 UGUGCAAAAGAAAAGUUUUGCCUAAUUUGCGG---CAAUAAAAGCAAGUGCCACGAAAAGCAGCUGAAAUUUGGUGGCGA----GAAAAUAGGAAA----------AGCAGCU ..............(((((.((((((((((..---........))))))(((((.(((..(....)...))).)))))..----.....)))).))----------))).... ( -22.80) >DroSec_CAF1 95770 106 + 1 UGGGCGGAAGAAAAGUUUUGCCUAAUUUGCGG---CAAUAAAAGCAAGUGCCACGAAAAGCAGCUGAAAUUUGGUGGCGA----GAAAAUAGGAAAAAUUAGGAAAAGCAGCA ....(....)....(((((.((((((((((..---........))...((((((.(((..(....)...))).)))))).----...........)))))))).))))).... ( -23.80) >DroSim_CAF1 97890 100 + 1 UGGGCGGAAGAAAAGUUUUGCCUAAUUUGCGG---CAAUAAAAGCAAGUGCCACGAAAAGCAGCUGAAAUUUGGUGGCGA----GAAAAUAGGAAAAAAUAGGAAGA------ (((((((((......)))))))))((((((..---........))))))(((((.(((..(....)...))).)))))..----.......................------ ( -23.40) >DroEre_CAF1 93837 96 + 1 AAGGAGGGAGAAAAGUUUUGCCUAAUUUGCGG---CAAUAAAAGCAAGUGCCACGAAAAGCAGCUAAAAUUUGGUGGCAC----AAAAAGGGGAAA----------AGAAACU .............((((((.(((...((((..---........))))(((((((.(((...........))).)))))))----......)))...----------.)))))) ( -23.10) >DroYak_CAF1 103127 95 + 1 AAGGAGGUAGAAAAGUUUUGCCUAAUUUGCGG---CAAUAAAAGCAACUGCCACGAAAAGCAACUGAAAUUUGGUGGC-C----AAAAUGGAAAUA----------AGAAGCU ....(((((((.....))))))).....((.(---(.......))....(((((.(((..(....)...))).)))))-.----............----------....)). ( -17.60) >DroAna_CAF1 94891 113 + 1 GGUGGAGAAGAAAAGUUCUGCCUAAUUUGCGGUUGCAAUAAAACCAAGAAGAGCAGAAAGCUGCUAAAAAGCAAAGACAACCCCUAGAAGAAUAAAAGUUAAAAAGUAGAGCU .............((((((((....(((((((((.......))))......(((((....))))).....)))))(((...................))).....)))))))) ( -22.81) >consensus UGGGCGGAAGAAAAGUUUUGCCUAAUUUGCGG___CAAUAAAAGCAAGUGCCACGAAAAGCAGCUGAAAUUUGGUGGCGA____GAAAAGAGGAAA__________AGAAGCU .(((.((((......)))).))).((((((.............))))))(((((.(((...........))).)))))................................... ( -8.44 = -9.50 + 1.06)
| Location | 13,823,970 – 13,824,066 |
|---|---|
| Length | 96 |
| Sequences | 6 |
| Columns | 113 |
| Reading direction | reverse |
| Mean pairwise identity | 72.92 |
| Mean single sequence MFE | -17.47 |
| Consensus MFE | -10.81 |
| Energy contribution | -10.34 |
| Covariance contribution | -0.47 |
| Combinations/Pair | 1.42 |
| Mean z-score | -2.07 |
| Structure conservation index | 0.62 |
| SVM decision value | 1.94 |
| SVM RNA-class probability | 0.983289 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 13823970 96 - 27905053 AGCUGCU----------UUUCCUAUUUUC----UCGCCACCAAAUUUCAGCUGCUUUUCGUGGCACUUGCUUUUAUUG---CCGCAAAUUAGGCAAAACUUUUCUUUUGCACA .(.(((.----------............----..(((((.(((...........))).)))))...........(((---((........)))))............)))). ( -17.50) >DroSec_CAF1 95770 106 - 1 UGCUGCUUUUCCUAAUUUUUCCUAUUUUC----UCGCCACCAAAUUUCAGCUGCUUUUCGUGGCACUUGCUUUUAUUG---CCGCAAAUUAGGCAAAACUUUUCUUCCGCCCA ....((.......................----..(((((.(((...........))).)))))...........(((---((........)))))............))... ( -16.20) >DroSim_CAF1 97890 100 - 1 ------UCUUCCUAUUUUUUCCUAUUUUC----UCGCCACCAAAUUUCAGCUGCUUUUCGUGGCACUUGCUUUUAUUG---CCGCAAAUUAGGCAAAACUUUUCUUCCGCCCA ------.......................----..(((((.(((...........))).)))))...........(((---((........)))))................. ( -15.10) >DroEre_CAF1 93837 96 - 1 AGUUUCU----------UUUCCCCUUUUU----GUGCCACCAAAUUUUAGCUGCUUUUCGUGGCACUUGCUUUUAUUG---CCGCAAAUUAGGCAAAACUUUUCUCCCUCCUU ((((...----------............----(((((((.(((...........))).))))))).........(((---((........)))))))))............. ( -18.70) >DroYak_CAF1 103127 95 - 1 AGCUUCU----------UAUUUCCAUUUU----G-GCCACCAAAUUUCAGUUGCUUUUCGUGGCAGUUGCUUUUAUUG---CCGCAAAUUAGGCAAAACUUUUCUACCUCCUU .......----------.........(((----(-(...)))))......((((((...((((((((.......))))---)))).....))))))................. ( -17.70) >DroAna_CAF1 94891 113 - 1 AGCUCUACUUUUUAACUUUUAUUCUUCUAGGGGUUGUCUUUGCUUUUUAGCAGCUUUCUGCUCUUCUUGGUUUUAUUGCAACCGCAAAUUAGGCAGAACUUUUCUUCUCCACC (((.........(((((((((......)))))))))....((((....)))))))(((((((.....(((((.......))))).......)))))))............... ( -19.60) >consensus AGCUGCU__________UUUCCUAUUUUC____UCGCCACCAAAUUUCAGCUGCUUUUCGUGGCACUUGCUUUUAUUG___CCGCAAAUUAGGCAAAACUUUUCUUCCGCCCA ...................................(((...........(((((.....)))))..((((.............))))....)))................... (-10.81 = -10.34 + -0.47)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:51:20 2006