Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 13,821,725 – 13,821,815 |
Length | 90 |
Max. P | 0.687619 |
Location | 13,821,725 – 13,821,815 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 102 |
Reading direction | reverse |
Mean pairwise identity | 75.28 |
Mean single sequence MFE | -22.67 |
Consensus MFE | -5.25 |
Energy contribution | -5.62 |
Covariance contribution | 0.37 |
Combinations/Pair | 1.39 |
Mean z-score | -2.72 |
Structure conservation index | 0.23 |
SVM decision value | 0.32 |
SVM RNA-class probability | 0.687619 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 13821725 90 - 27905053 CUUACCCUUUUGCCGGA--------UUUUUGAAAAGUUCAAAUGGCAUGAAAAUGCAGCAGAAUAAACAAAAAUUAAGC--CGGAAAAA--AAAGGGAAAUA ....(((((((.(((((--------((((((....((((.....((((....))))....))))...)))))))....)--)))....)--))))))..... ( -26.30) >DroSec_CAF1 93547 88 - 1 CUUGC-CUUUUGCCGGA--------UUUUUGAAAAUUUCAAAUGGCAUGAAAAUGCAGCAGAAUAAACAAGAAUUUAGC--CGGAAAA---AAGGGGAAAUA .((.(-(((((.(((((--------((((((.....(((.....((((....))))....)))....)))))))....)--)))...)---))))).))... ( -23.20) >DroSim_CAF1 95640 89 - 1 CUUGCCCUUUUGCCGGA--------UUUUUGAAAAGUUCAAAUGGCAUGAAAAUGCAGCAGAAUAAACAAGAAUUAAGC--CGGAAAA---AAGGGGAAAUA ....(((((((.(((((--------((((((....((((.....((((....))))....))))...)))))))....)--)))...)---))))))..... ( -26.40) >DroEre_CAF1 91584 88 - 1 CACGCCCUUUUCCCCGA--------UUUUUGAGCAGUUCAAAUGGCACGAAAAUGUAGCAGAAUAAACAAGAAUUAAGC--CGGGAA----AAAGGGAAAUG ....(((((((.(((((--------((((((.((.((....)).)).)))))))...((..(((........)))..))--)))).)----))))))..... ( -22.80) >DroYak_CAF1 100861 87 - 1 C-CGCCCUU-UCCCUCA--------UUUUUGAACAGUUCAAAUGGCACGAAAAUUUAACAGAAUAAACCAGUAUUAAGC--CGGAAAA---AAAGGGAAAUG .-.....((-(((((.(--------((((((..((.......))...))))))).............((.((.....))--.))....---..))))))).. ( -12.80) >DroAna_CAF1 92775 102 - 1 ACACCCCUCUUGCGGCAGUCUGCUGCUCUCGGCCAGGUCAAAUAGCCCGAAAAUGCAGCAGGGCAAACAAAAAUUAAGCGUCUGAUCGAAACGUGUGUAAAG ((((((((.(((((((((....))))).((((.(..........).))))....)))).))))..............((((.........)))))))).... ( -24.50) >consensus CUUGCCCUUUUGCCGGA________UUUUUGAAAAGUUCAAAUGGCACGAAAAUGCAGCAGAAUAAACAAGAAUUAAGC__CGGAAAA___AAAGGGAAAUA ....((((((..(((............((((((...))))))..(((......))).........................))).......))))))..... ( -5.25 = -5.62 + 0.37)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:51:17 2006