| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 13,820,796 – 13,820,890 |
| Length | 94 |
| Max. P | 0.996413 |
| Location | 13,820,796 – 13,820,890 |
|---|---|
| Length | 94 |
| Sequences | 5 |
| Columns | 102 |
| Reading direction | forward |
| Mean pairwise identity | 73.53 |
| Mean single sequence MFE | -17.01 |
| Consensus MFE | -6.32 |
| Energy contribution | -6.53 |
| Covariance contribution | 0.21 |
| Combinations/Pair | 1.07 |
| Mean z-score | -2.55 |
| Structure conservation index | 0.37 |
| SVM decision value | 2.69 |
| SVM RNA-class probability | 0.996413 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 13820796 94 + 27905053 CACUCUAUAUGUA--GCACCCACUAUCCUUUUUUUUGGGGGGAAUUUACCUCACCCCU------CACUACGGCCCCUCGCCUGCUGUACAUGCAAACCAUUU .......((((((--(((.................(((((((...........)))))------))....(((.....)))))))..))))).......... ( -19.80) >DroSec_CAF1 92682 78 + 1 CAUUCUAUAUGUAUCGCACCCACUAUCCUUUUUU---GGGGGAAUUUACCUCAUCCAC---------------------CCUACUGUGCAUGCAAACCAUUU .........(((((.((((..............(---((((.......))))).....---------------------......)))))))))........ ( -13.81) >DroSim_CAF1 94741 78 + 1 CACUCUAUAUGUAUCGCACCCACUAUCCUUUUUU---GGGGGAAUUUACCUCAUCCAC---------------------CCUGCUGUGCAUGCAAACCAUUU .......(((((((.(((((((..(.....)..)---)))(((..........)))..---------------------..))).))))))).......... ( -14.90) >DroEre_CAF1 90621 77 + 1 CACUCUGUAUGUA--GCACCCACUAUCCUUUUUU---GGG-GAAUUUUC-------------------CCUACCCCUCGCCUGCUGUGCAUGCAAACCAUUU ......((.((((--((((..............(---(((-((....))-------------------)))).............)))).)))).))..... ( -14.93) >DroYak_CAF1 99926 97 + 1 CACUCUAUAUGUA--CCACCCACUAUCCAUUUUU---GGGGGAAGUUUCCCCCUCGCCCUCGCCCGCCCCUCCCCCUUGGCUGCUGUACAUGCAAACCAUUU .......((((((--(..................---((((((....))))))........((..(((..........))).)).))))))).......... ( -21.60) >consensus CACUCUAUAUGUA__GCACCCACUAUCCUUUUUU___GGGGGAAUUUACCUCAUCCAC___________C__CCCCU_GCCUGCUGUGCAUGCAAACCAUUU .......((((((..((((((................)))((......))...............................)))..)))))).......... ( -6.32 = -6.53 + 0.21)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:51:15 2006