Locus 5291

Sequence ID 3R_DroMel_CAF1
Location 13,820,099 – 13,820,216
Length 117
Max. P 0.999091
window8631

overview

Window 1

Location 13,820,099 – 13,820,216
Length 117
Sequences 5
Columns 117
Reading direction forward
Mean pairwise identity 96.04
Mean single sequence MFE -42.00
Consensus MFE -36.16
Energy contribution -36.64
Covariance contribution 0.48
Combinations/Pair 1.05
Mean z-score -3.02
Structure conservation index 0.86
SVM decision value 3.37
SVM RNA-class probability 0.999091
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 13820099 117 + 27905053
GUCUUUCGACGCUUCGAGCCGGCUAAUGACAAUAGACAGAUGGAAAUUCCGGUGGGAAGUUUUGGGCUAACCCUGGCUGGCAUUUCAUUGUCAUUGAGUCGAAUGUUGAAUGGCAAU
(((.((((((((.....))((((((((((((((...(....)(((((.((((((((.(((.....)))..)))..))))).)))))))))))))).)))))...)))))).)))... ( -39.50)
>DroSec_CAF1 91997 116 + 1
GUCUUUCGACGCUUCGAGCCUACUAAUGACAAUAGACAGAUGGAAAUUCCGGUGGGGAGUUUUCGGCUAACCCU-GCUGGCAUUUCAUUGUCAUUGAGUCGAAUGUUGAAUGGCAAU
(((.(((((((.(((((..((..((((((((((...(....)(((((.((((..((((((.....)))..))).-.)))).))))))))))))))))))))))))))))).)))... ( -42.60)
>DroSim_CAF1 94055 116 + 1
GUCUUUCGACGCUUCGAGUCGGCUAAUGACAAUAGACAGAUGGAAAUUCCGCUGGGGAGUUUUCGGCUAACCCU-GCUGGCAUUUCAUUGUCAUUGAGUCGAAUGUUGAAUGGCAAU
(((.(((((((.(((((.(((....((((((((.((..((((((((((((.....))))))))((((.......-)))).))))))))))))))))).)))))))))))).)))... ( -40.90)
>DroEre_CAF1 89909 115 + 1
GUCUUUCGACGCUUC-AGCCGGCUAAUGACAAUAGACAGAUGGAAAUUCCGGUGGGGAGUUUUCGGCUAACCCU-GCUGGCAUUUCAUUGUCAUUGAGUCGAAUGUUGAAUGGCAAU
(((.((((((((...-.))((((((((((((((...(....)(((((.((((..((((((.....)))..))).-.)))).)))))))))))))).)))))...)))))).)))... ( -44.60)
>DroYak_CAF1 99233 115 + 1
GUCUUUCGACGCUUC-AGCCGGCUAAUGACAAUAGACAGAUGGAAAUUCCGGAGGGGAGUUGUCGGCUAACCCU-GCUGGCAUUUCAUUGUCAUUGAGUCGAAUGCUGAAUGGCAAU
(((....)))(((((-(((((((((((((((((...(....)(((((.((((((((.(((.....)))..))))-.)))).)))))))))))))).)))))...)))))..)))... ( -42.40)
>consensus
GUCUUUCGACGCUUCGAGCCGGCUAAUGACAAUAGACAGAUGGAAAUUCCGGUGGGGAGUUUUCGGCUAACCCU_GCUGGCAUUUCAUUGUCAUUGAGUCGAAUGUUGAAUGGCAAU
(((.((((((((.....))((((((((((((((...(....)(((((.((((((((.(((.....)))..)))..))))).)))))))))))))).)))))...)))))).)))... (-36.16 = -36.64 +   0.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:51:12 2006