| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 13,816,962 – 13,817,052 |
| Length | 90 |
| Max. P | 0.740897 |
| Location | 13,816,962 – 13,817,052 |
|---|---|
| Length | 90 |
| Sequences | 4 |
| Columns | 90 |
| Reading direction | forward |
| Mean pairwise identity | 85.49 |
| Mean single sequence MFE | -15.47 |
| Consensus MFE | -10.88 |
| Energy contribution | -10.75 |
| Covariance contribution | -0.12 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.83 |
| Structure conservation index | 0.70 |
| SVM decision value | 0.45 |
| SVM RNA-class probability | 0.740897 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 13816962 90 + 27905053 GCAAAACGAAAAACAUUUCCUGAUCGAAUCAAAGCAAAGUUUGCAAAAGAGUUGCGCGAAUCGAGGCGAAAACGCAAACGCAAAGUGCAA (((...((...............((((.((...((((..(((....)))..))))..)).)))).(((....)))...)).....))).. ( -17.40) >DroSec_CAF1 88911 77 + 1 AAAAAACGAAAAACAUUUCCUGAUCGAAUCAAAGCAAAGUUUGCAAAAGAGUUGCGCGAAUCGAGGCGAAAACGCA-------------A .......................((((.((...((((..(((....)))..))))..)).)))).(((....))).-------------. ( -13.70) >DroSim_CAF1 90822 77 + 1 AAAAAACGAAAAACAUUUCCUGAUCGAAUCAAAGCAAAGUUUGCAAAAGAGUUGCGCGAAUCGAGGCGAAAACGCA-------------A .......................((((.((...((((..(((....)))..))))..)).)))).(((....))).-------------. ( -13.70) >DroAna_CAF1 88462 84 + 1 AAAAAACGCAAAACAUUUCCUGAUCGAAUCAAAGCAAAGUUUGCAAAAGAGUUGCACGAAUUGGGGGAAAAACGC------CAAGUGCAA .......(((((........((((...))))........))))).......((((((...((((.(......).)------))))))))) ( -17.09) >consensus AAAAAACGAAAAACAUUUCCUGAUCGAAUCAAAGCAAAGUUUGCAAAAGAGUUGCGCGAAUCGAGGCGAAAACGCA_____________A ...............((((....((((.((...((((..(((....)))..))))..)).))))...))))................... (-10.88 = -10.75 + -0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:51:11 2006