| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 13,807,917 – 13,808,009 |
| Length | 92 |
| Max. P | 0.628007 |
| Location | 13,807,917 – 13,808,009 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 102 |
| Reading direction | forward |
| Mean pairwise identity | 71.89 |
| Mean single sequence MFE | -31.12 |
| Consensus MFE | -8.70 |
| Energy contribution | -9.03 |
| Covariance contribution | 0.34 |
| Combinations/Pair | 1.40 |
| Mean z-score | -2.16 |
| Structure conservation index | 0.28 |
| SVM decision value | 0.19 |
| SVM RNA-class probability | 0.628007 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 13807917 92 + 27905053 AAUUUUCCUCCUCGCUGCCAGAGUCGCUUUUCCUGGCCGCGGA--CCCUAAGAUGUCUC-AGGGCUGUGGAAAAC-----U-GCGG-AAAAGUGGAAAUCAU ...(((((..(((.......)))..((((((((.(.((((((.--((((.((....)).-))))))))))....)-----.-..))-))))))))))).... ( -32.40) >DroSec_CAF1 79982 79 + 1 AAUUUUCCCCCGCGCUGCAAGAGUCGCUUUUCCUG---------------AGAUGUCUC-AGGGCUGUGGAAAAC-----U-GCGG-AAAAGUGGGAAUCAU ........(((((.(((((....((((...(((((---------------((....)))-))))..)))).....-----)-))))-....)))))...... ( -29.70) >DroSim_CAF1 81913 79 + 1 AAUUUUCCCCCGCGCUGCAAGAGUCGCUUUUCCUG---------------AGAUGUCUC-AGGGCUGCGGAAAAC-----U-GCGG-AAAAGUGGGAAUCAU ........(((((.(((((....((((...(((((---------------((....)))-))))..)))).....-----)-))))-....)))))...... ( -31.60) >DroEre_CAF1 78009 90 + 1 AAUUUC-CCCCGCCCUGCAAGCGAUGCUUGUCCUGGCCGAGGAUGUCCUGAGAUGUCUC-AGGGC---GGAAAAC-----U-GCGG-AAAAGUGGGAAUCAU ......-.(((((((.((((((...))))))...))(((((..(((((((((....)))-)))))---).....)-----)-.)))-....)))))...... ( -34.30) >DroYak_CAF1 87022 88 + 1 GAUUUU-CCCCGCGCUGCAAGAGACGCUUUUCCUGGCCGAGGA--CCCUGAGAUGUCAC-AGGGC---GGAAAAC-----U-GCGG-AAAAGUAGGAAUCAU (((((.-..((((.(((.....(((((((.((((.....))))--....))).)))).)-)).))---))....(-----(-((..-....))))))))).. ( -26.40) >DroAna_CAF1 80344 98 + 1 AGCUUUUCUCCCGGUCGCAGGAUAUGUUUUCCCUAGCCAAGGA--C--AAGGAUGUCUCCACUGCUACUGUUAGCAGUGCUGGAGGAAAAAGGGGAAUUCAU .....(((.(((.(((....)))...(((((((((((...(((--(--(....)))))..(((((((....)))))))))))).)))))).))))))..... ( -32.30) >consensus AAUUUUCCCCCGCGCUGCAAGAGACGCUUUUCCUGGCCGAGGA__C__U_AGAUGUCUC_AGGGCUG_GGAAAAC_____U_GCGG_AAAAGUGGGAAUCAU ........(((((.((((.......(((......))).................(((.....))).................)))).....)))))...... ( -8.70 = -9.03 + 0.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:51:06 2006