Locus 5285

Sequence ID 3R_DroMel_CAF1
Location 13,801,488 – 13,801,584
Length 96
Max. P 0.500000
window8623

overview

Window 3

Location 13,801,488 – 13,801,584
Length 96
Sequences 6
Columns 99
Reading direction forward
Mean pairwise identity 80.58
Mean single sequence MFE -16.46
Consensus MFE -10.70
Energy contribution -11.65
Covariance contribution 0.95
Combinations/Pair 1.14
Mean z-score -1.32
Structure conservation index 0.65
SVM decision value -0.07
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 13801488 96 + 27905053
CCAAA-AAAAA--AAAGUCCACAGAAUAACAACGAAGGAUUGGAAAACGAAACUGAGGUUACCCAUAGUUAAAUAGAAUAAUAUGGUAAUUGGGGUAUC
.....-.....--.....((.(((........(....).(((.....)))..))).)).(((((.((((((.(((......)))..))))))))))).. ( -15.10)
>DroSec_CAF1 73710 92 + 1
CCAAA-A------AAAAUCCACAGAAUAACACCGAAGGAUUGGAAAACGAAACUGAGGUUACCCAUAGUUAAAUAGAAUAAUAUGGUAAUUGGGGUAUC
.....-.------.................(((..((..(((.....)))..))..)))(((((.((((((.(((......)))..))))))))))).. ( -17.00)
>DroSim_CAF1 74437 91 + 1
CCUGA--------AAAGUCCACAGAAUAACACCGAAGGAUUGGAAAACGAAACUGAGGUUACCCAUAGUUAAAUAGAAUAAUAUGGUAAUUGGGGUAUC
.((..--------..)).............(((..((..(((.....)))..))..)))(((((.((((((.(((......)))..))))))))))).. ( -17.30)
>DroEre_CAF1 71903 93 + 1
CCAAA-AAA-----AAAUCCCCAGAAUAACACCGAAGGAUUGGAAAACGAAACUGAGGUUACCCACAGUUACAUAGAGUAAUAUGGUAAUUGGGGUAUC
.....-...-----................(((..((..(((.....)))..))..)))(((((.((((((((((......))).)))))))))))).. ( -21.70)
>DroYak_CAF1 79747 98 + 1
CCAAA-UAAAAGCAAAAUCCACAGAAUAACACCGAAGGAUUGGAAUACGAAACUGAGGUUACCCAUAGUUAAAUAGAGUAAUAUGGUAAUUGGGGUAUC
.....-........................(((..((..(((.....)))..))..)))(((((.((((((.(((......)))..))))))))))).. ( -17.00)
>DroAna_CAF1 74245 93 + 1
AUUGAAAAGGA--CGAGUCGCCGGAAUAACACUAGAAAAUUG-AAAACGAAACCGGAGUAACCCCUAAAAAAAUAGAUAGCUUU---GAUUGGGGAAUA
...........--.......((((..................-.........))))......((((((..(((........)))---..)))))).... ( -10.63)
>consensus
CCAAA_AAA____AAAAUCCACAGAAUAACACCGAAGGAUUGGAAAACGAAACUGAGGUUACCCAUAGUUAAAUAGAAUAAUAUGGUAAUUGGGGUAUC
..............................(((..((..(((.....)))..))..)))(((((.((((((.(((......)))..))))))))))).. (-10.70 = -11.65 +   0.95)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:51:04 2006