Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 13,799,746 – 13,799,852 |
Length | 106 |
Max. P | 0.803297 |
Location | 13,799,746 – 13,799,852 |
---|---|
Length | 106 |
Sequences | 4 |
Columns | 112 |
Reading direction | reverse |
Mean pairwise identity | 89.88 |
Mean single sequence MFE | -23.76 |
Consensus MFE | -19.95 |
Energy contribution | -20.83 |
Covariance contribution | 0.87 |
Combinations/Pair | 1.07 |
Mean z-score | -1.74 |
Structure conservation index | 0.84 |
SVM decision value | 0.62 |
SVM RNA-class probability | 0.803297 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 13799746 106 - 27905053 GGCAUUUAGCCUACAACGCAAUUUCAAUUGUGCUCUUUCUAAGAAAUGUCUUUGUUGGAAAUGCACAAUGGAAAAACC------UUACGUACAAUCCUUAUUUAUAGAGCCA (((.((((((.......))..((((.(((((((..(((((((.(((....))).))))))).))))))).))))....------....................))))))). ( -24.30) >DroSec_CAF1 71939 111 - 1 GGCAUUUAGCCUAGAACGCUAUUUCAAUUGUGCUCCUUCUUGGAAAUGUCUUUGU-GGAAAUGCACAAUAGAAAAACCUUUUCCUUACGUACAAUCCUUAUUUAUAGAGCCA (((...((((.......))))((((.((((((((((..(..(((....)))..).-)))...))))))).))))..................................))). ( -23.00) >DroSim_CAF1 72665 112 - 1 GGCAUUUAGCCUAGAACGCUAUUUCAAUUGUGCUCCUUCUUGGAAAUGUCUUUGUUGGAAAUGCACAAUGGAAAAACCUUUUCCUUACGUACAAUCCUUAUUUAUAGAGCCA (((...((((.......))))..((.((((((((((..(..(((....)))..)..)))...)))))))(((((.....)))))......................))))). ( -24.00) >DroEre_CAF1 70217 112 - 1 GGCAUUUAGCCCACAAUGGUAUUUCAAUUCUGCUCUUUCUUAGAAAUGUCUUUGUGGGAAAUGCACAAUAGAAAACCCUUUUUCUUACAUACAAUCCUUGUUUAUAGAGCCA (((.((((.(((((((.(..(((((.................)))))..).)))))))...((......((((((....))))))......))...........))))))). ( -23.73) >consensus GGCAUUUAGCCUACAACGCUAUUUCAAUUGUGCUCCUUCUUAGAAAUGUCUUUGUUGGAAAUGCACAAUAGAAAAACCUUUUCCUUACGUACAAUCCUUAUUUAUAGAGCCA (((...((((.......))))((((.(((((((...((((((.(((....))).))))))..))))))).))))..................................))). (-19.95 = -20.83 + 0.87)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:51:03 2006