Locus 5283

Sequence ID 3R_DroMel_CAF1
Location 13,787,830 – 13,787,927
Length 97
Max. P 0.579203
window8621

overview

Window 1

Location 13,787,830 – 13,787,927
Length 97
Sequences 4
Columns 110
Reading direction forward
Mean pairwise identity 65.01
Mean single sequence MFE -20.32
Consensus MFE -14.38
Energy contribution -15.13
Covariance contribution 0.75
Combinations/Pair 1.00
Mean z-score -0.75
Structure conservation index 0.71
SVM decision value 0.09
SVM RNA-class probability 0.579203
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 13787830 97 + 27905053
GCGGGCCGGAGGGCGUGGCUGGUGCAUGCCAUAUAGCGUGGAUAUGCUACCUAUACUUAUGCUACACUAACCUAAAACACACACACACCACCCACA-------------C
..(((((....)))(((((.((((((((((((.....)))).))))).))).........)))))......................)).......-------------. ( -25.10)
>DroSim_CAF1 60278 85 + 1
------------GCGUGGCUGGUGCAUGCCAUAUAUCGUGGAUAAGCUACCUAUACUUAUGCUACACUAANNNNNNNNNNNNNNNNNNNNNNNNNN-------------N
------------..(((((.(((((.((((((.....)))).)).)).))).........)))))...............................-------------. ( -13.90)
>DroEre_CAF1 58504 100 + 1
----------GGGCGUGGCUGGUGCAUGCCAUAUAGCGUGGAUAUGCUACCUAUACUUAUGCUACACUAACCUAAAACACACACUCCACCCAACAUCCACCACCCACCAU
----------(((.((((.((((....))))..(((((((..((((.....))))..)))))))................................))))..)))..... ( -20.60)
>DroYak_CAF1 66886 85 + 1
----GCGGGGGGGAGUGGCUGGUGCAUGCCUUAUAGCGUGGAUAUGGUACCUAUACUUGUGCUACACUAACCUAAAACACACACACCAC---------------------
----....(((..((((...(((....)))...(((((..(.(((((...))))).)..)))))))))..)))................--------------------- ( -21.70)
>consensus
__________GGGCGUGGCUGGUGCAUGCCAUAUAGCGUGGAUAUGCUACCUAUACUUAUGCUACACUAACCUAAAACACACACACCAC_____________________
..............(((((.((((((((((((.....)))).))))).))).........)))))............................................. (-14.38 = -15.13 +   0.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:51:02 2006