| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 13,777,675 – 13,777,781 |
| Length | 106 |
| Max. P | 0.764545 |
| Location | 13,777,675 – 13,777,781 |
|---|---|
| Length | 106 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 67.81 |
| Mean single sequence MFE | -17.72 |
| Consensus MFE | -4.85 |
| Energy contribution | -7.13 |
| Covariance contribution | 2.28 |
| Combinations/Pair | 1.18 |
| Mean z-score | -2.03 |
| Structure conservation index | 0.27 |
| SVM decision value | 0.51 |
| SVM RNA-class probability | 0.764545 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 13777675 106 + 27905053 UUAGGUGUUCACACCGA----AAAAUU-CAAAUAAAAAAGUAAUG-----AAAUGU---AAUG-UAUUUUUGAGAACUAACCAAAAUACGCAAAUAUUCAACAAAGGUGUGGAUACGCUU ....(((((((((((((----.....)-)..............((-----((.(((---..((-((((((.(........).))))))))...))))))).....))))))))))).... ( -22.50) >DroSec_CAF1 50028 112 + 1 UUAGGUAUUCACACCAAACAAAAAAUUCCAAAA--AAAAGUAAAG-----AAAUGUUAAAAUG-CAUUUUUGAGAAUUAUCCAAAAUACGCAAAUAUUCAAUAAAGGUGUGGAUACGCUU ....(((((((((((..................--........((-----((((((......)-)))))))..((((..................))))......))))))))))).... ( -23.57) >DroSim_CAF1 49287 119 + 1 UUAGGUAUUCACACCAAACAAAAAAUUACAAAAAAAAAAGUAAAGACAGGAAAUGUUAUAAUG-CAUUUUUGAGAAUUAUACAAAAUACGCAAAUAUUUAACAAAGGUGUGGAUACGCUU ....(((((((((((........................((((.....((((((((......)-))))))).....))))...(((((......)))))......))))))))))).... ( -23.70) >DroEre_CAF1 48684 96 + 1 UU------U--UACCAAAUGAAAAAUACCAA---AAAAGGUAAAA-----AAA--------UAAGAUUACAAAGAAUUCGCAGAUAUUCGCAGAUAUUCAAGCAAGGCGUGGACACAUUU ..------.--....(((((.....((((..---....))))...-----...--------...(.((((...((((((((........)).)).))))..((...)))))).).))))) ( -10.50) >DroYak_CAF1 56674 89 + 1 UU------U--UACCAAAAUAA----GCAAA---ACAAGGUUAAA-----A----------UG-AAUUGUCAAGAAUUAUCCAAAAUACGCAAAUAUUCCACCAAGGUGUGGAUACAUUU ..------.--...........----((...---....((.(((.-----.----------((-(....)))....))).)).......))...((((((((....))).)))))..... ( -8.34) >consensus UUAGGU_UUCACACCAAACAAAAAAUUCCAAA__AAAAAGUAAAG_____AAAUGU___AAUG_CAUUUUUGAGAAUUAUCCAAAAUACGCAAAUAUUCAACAAAGGUGUGGAUACGCUU ....(((((((((((..........................................................................................))))))))))).... ( -4.85 = -7.13 + 2.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:51:00 2006