| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 13,775,025 – 13,775,127 |
| Length | 102 |
| Max. P | 0.904382 |
| Location | 13,775,025 – 13,775,127 |
|---|---|
| Length | 102 |
| Sequences | 6 |
| Columns | 107 |
| Reading direction | reverse |
| Mean pairwise identity | 79.55 |
| Mean single sequence MFE | -21.28 |
| Consensus MFE | -16.79 |
| Energy contribution | -17.43 |
| Covariance contribution | 0.64 |
| Combinations/Pair | 1.32 |
| Mean z-score | -1.80 |
| Structure conservation index | 0.79 |
| SVM decision value | 1.04 |
| SVM RNA-class probability | 0.904382 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 13775025 102 - 27905053 GCCAUA-U--AAAACGAUCUGAUUUCUCGCUGUGCAUGGGCAUGACUUGCCCAAAGUUCGCUUUUCUCC--CCCAAGUGAACGCUAUGUACAUAUCUUACUCUCUCG ......-.--....(((...((........((((((((((((.....)))))...((((((((......--...))))))))...)))))))........))..))) ( -25.09) >DroSec_CAF1 47425 101 - 1 UCCUUA-A--AAAACGAUCUGAUUUCUCGCUGUGCAUGGGCAUGACUU-CCCAAAGUUCGCUUUUCUCC--CCCAAGUGAACGCUAUGUACAUAUCUUACUCUCUCG ......-.--....(((...((........((((((((((........-)))...((((((((......--...))))))))...)))))))........))..))) ( -18.99) >DroSim_CAF1 46660 102 - 1 UCCUUA-A--AAAACGAUCUGAUUUCUCGCUGUGCAUGGGCAUGACUUGCCCAAAGUUCGCUUUUCUCC--CCCAAGUGAACGCUAUGUACAUAUCUUACUCUCUCG ......-.--....(((...((........((((((((((((.....)))))...((((((((......--...))))))))...)))))))........))..))) ( -25.09) >DroEre_CAF1 46151 100 - 1 UCCACA----AAAAUGCCCCGAUUUCUUGCCGUGCAUGGGCAUGACUUGCCCAAAGUUCGCUUUUCUCC--CCC-AGCGAAUGCCAUGUACAUAUCUUACUCUCUCG ......----.....................(((((((((((.....)))))...(((((((.......--...-)))))))...))))))................ ( -22.80) >DroYak_CAF1 53925 102 - 1 UUCACA-U--GAAAUGCCCCGAUUUCUCGCUGUGCACGAGCAUGACUUGCCCAAAGUUCGCUUUUCUCC--CCCAAGUGAACGCUAUGUACAUAUCUUACUCUCUCG ......-.--(((((......)))))....((((((.(.(((.....))).)...((((((((......--...))))))))....))))))............... ( -18.30) >DroAna_CAF1 48807 94 - 1 UUCUUGGAAAAAAAAACCCC--CUUUUUUCUGUGCAUA-GCAUGACUUGUCUAAAGUUGGCUCCACUCUCCCACAAGCCAGC----------UAUCUUAUUCUCACA .....((((((((.......--.))))))))(((..((-(((.....)).))).((((((((.............)))))))----------)..........))). ( -17.42) >consensus UCCAUA_A__AAAACGACCCGAUUUCUCGCUGUGCAUGGGCAUGACUUGCCCAAAGUUCGCUUUUCUCC__CCCAAGUGAACGCUAUGUACAUAUCUUACUCUCUCG ...............................(((((((((((.....))))))..((((((((...........))))))))....)))))................ (-16.79 = -17.43 + 0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:50:59 2006