Locus 5277

Sequence ID 3R_DroMel_CAF1
Location 13,767,329 – 13,767,421
Length 92
Max. P 0.885047
window8611

overview

Window 1

Location 13,767,329 – 13,767,421
Length 92
Sequences 6
Columns 92
Reading direction reverse
Mean pairwise identity 92.83
Mean single sequence MFE -12.52
Consensus MFE -11.45
Energy contribution -11.48
Covariance contribution 0.03
Combinations/Pair 1.05
Mean z-score -1.40
Structure conservation index 0.92
SVM decision value 0.93
SVM RNA-class probability 0.885047
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 13767329 92 - 27905053
AAGAACCAAUUCCCAUUACCAAUUCUUGUUUAUGCAUCGAAAACAAAUUCAAAAAUUGAAUUUUCUGCCUUUCUCUUUUGGGAAUCUAAACA
........(((((((.......(((.(((....)))..)))...(((((((.....)))))))...............)))))))....... ( -12.80)
>DroSec_CAF1 39901 92 - 1
AGGAACCAAUUCCCAUUACCAAUUCUUGUUUAUGCAUCGAAAACAAAUUCAAAAAUUGAAUUUUCUGCCUUUCUCUUUUGGGAAUCUAAACA
........(((((((.......(((.(((....)))..)))...(((((((.....)))))))...............)))))))....... ( -12.80)
>DroSim_CAF1 38831 92 - 1
AGGAACCAAUUCCCAUUACCAAUUCUUGUUUAUGCAUCGAAAACAAAUUCAAAAAUUGAAUUUUCUGCCUUUCUCUUUUGGGAAUCUAAACA
........(((((((.......(((.(((....)))..)))...(((((((.....)))))))...............)))))))....... ( -12.80)
>DroEre_CAF1 38419 92 - 1
AGGAACCAAUUCCCAUUACCAAUUCUUGUUUAUGCAUCGAAAACAAAUUCAAAAAUUGAAUUCUCUGCCUUUCUCUUUUGGGAAUCUAAACA
........(((((((...........(((....)))..((((.((((((((.....))))))...))..)))).....)))))))....... ( -12.00)
>DroYak_CAF1 40949 92 - 1
AGGGACCAAUUCCCAUUACCAAUUCUUGUUUAUGCAUCGAAAACAAAUUCAAAAAUUGAAUUUUCUGCCUUUCUCUUUGGGGAAUCUAAACC
.((((.....)))).............(((((.(((..((((....(((((.....))))))))))))..(((((....)))))..))))). ( -14.40)
>DroAna_CAF1 41613 87 - 1
UGAA---AAUUCCUAUUACCAAUUCUUGUUUAUGCAUCGAAAACAAAUUCAAAAAUUGAAUUUUCCUUCUU--CCUUUAGGGAAUCCAAGCA
....---..((((((...........(((....)))..(((...(((((((.....)))))))...)))..--....))))))......... ( -10.30)
>consensus
AGGAACCAAUUCCCAUUACCAAUUCUUGUUUAUGCAUCGAAAACAAAUUCAAAAAUUGAAUUUUCUGCCUUUCUCUUUUGGGAAUCUAAACA
........((((((........(((.(((....)))..)))...(((((((.....)))))))................))))))....... (-11.45 = -11.48 +   0.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:50:53 2006