Locus 5274

Sequence ID 3R_DroMel_CAF1
Location 13,759,938 – 13,760,035
Length 97
Max. P 0.597591
window8607

overview

Window 7

Location 13,759,938 – 13,760,035
Length 97
Sequences 6
Columns 110
Reading direction reverse
Mean pairwise identity 71.88
Mean single sequence MFE -21.40
Consensus MFE -9.27
Energy contribution -11.22
Covariance contribution 1.95
Combinations/Pair 1.14
Mean z-score -1.76
Structure conservation index 0.43
SVM decision value 0.13
SVM RNA-class probability 0.597591
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 13759938 97 - 27905053
-----GAGUGUGUUCGAGA-GCUUCGUCAUUCUUGAAAACUAAUUUUAUUUACAGGUGAAGCGUUGCUUUUACCUGACCAC-------CCCCCACCACCCAUCAUCCCCA
-----((..((((((((((-(........))))))))...............((((((((((...)).)))))))).....-------.......)))...))....... ( -19.40)
>DroSec_CAF1 32554 97 - 1
-----GAGUGUGUUCGAGA-GCUUCGUCAUUCUUGAAAACUAAUUUUAUUUACAGGUGAAGCGUUGCUUUUACCUGACCAC-------CCCCCACCAACCACCAGCCCCA
-----.(((...(((((((-(........)))))))).)))...........((((((((((...)).)))))))).....-------...................... ( -19.10)
>DroSim_CAF1 31520 104 - 1
-----GAGUGUGUUCGAGA-GCUUCGUCAUUCUUGAAAACUAAUUUUAUUUACAGGUGAAGCGUUGCUUUUACCUGACCACCCCACACCCCCCACCAACCACCAGCCCCA
-----..((((((((((((-(........))))))))...............((((((((((...)).)))))))).......)))))...................... ( -22.50)
>DroEre_CAF1 31366 83 - 1
-----GAGUGUGUUCAAGC-GCUUCGUCAUUCUUGAAAACUAAUUUUAUUUACAGCUGGAGCGUUGCUUUUACCUGCC----CCAC--ACCCCAC---------------
-----..(((((....(((-(((((((......(((((.....)))))......)).))))))))((........)).----.)))--)).....--------------- ( -17.30)
>DroYak_CAF1 33303 75 - 1
-----AAGUGUGUUCGAGA-GCUUCGUCAUUCUUGGAAACUAAUUUUAUUUACAGGUGAAGCGUUGCUUUUACCUCCC--------------CCC---------------
-----.(((...(((((((-(........)))))))).)))............(((((((((...)).)))))))...--------------...--------------- ( -14.70)
>DroPer_CAF1 42880 85 - 1
AGAGGGAGGGC-AUCGAGAGGCUUGGUCAUUCUUUAAAACUAAUUUUAUUUACAGGUGAAGCAUGGCCC---------------------CCCUCAACCCUCCCUCU---
((((((((((.-...(((.((...((((((.(((((....(((......)))....))))).)))))).---------------------)))))..))))))))))--- ( -35.40)
>consensus
_____GAGUGUGUUCGAGA_GCUUCGUCAUUCUUGAAAACUAAUUUUAUUUACAGGUGAAGCGUUGCUUUUACCUGAC__________CCCCCACCA_CCACCA_CC___
......(((...(((((((.((...))...))))))).)))...........((((((((((...)).)))))))).................................. ( -9.27 = -11.22 +   1.95)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:50:50 2006