Locus 5272

Sequence ID 3R_DroMel_CAF1
Location 13,750,963 – 13,751,057
Length 94
Max. P 0.573898
window8602

overview

Window 2

Location 13,750,963 – 13,751,057
Length 94
Sequences 5
Columns 105
Reading direction reverse
Mean pairwise identity 80.78
Mean single sequence MFE -17.03
Consensus MFE -15.10
Energy contribution -15.70
Covariance contribution 0.60
Combinations/Pair 1.00
Mean z-score -1.33
Structure conservation index 0.89
SVM decision value 0.08
SVM RNA-class probability 0.573898
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 13750963 94 - 27905053
UAUGAAUGUUUAAAGUGCGCACUAAACGUUCACCUGAGCACGCUGAUUCGAAUC-----------CCCCCCUUCAUCCCUUCGGCUUCUUCUCAGACAAAUAUUG
..(((((((((..(((....)))))))))))).(((((...(((((...(((..-----------......)))......))))).....))))).......... ( -18.80)
>DroSec_CAF1 23966 105 - 1
UAUGAAUGUUUAAAGUGCGCACUAAACGUUCACCUGAGCACGCUGAUUCGAAACCCUCCCUACCCUCCCCCUUCACCCCUUCGCCUUCUUCUCAGACAAAUAUUG
..(((((((((..(((....)))))))))))).(((((......((..((((...........................))))...))..))))).......... ( -13.83)
>DroSim_CAF1 23997 103 - 1
UAUGAAUGUUUAAAGUGAGCACUAAACGUUCACCUGAUCACGCUGAUUCGAAAAAAAACC--CCUCCCCCCUUCACCUGUUCGGCUUCUUCGCAGACAAAUAUUG
....(((((((...((((((.......))))))(((.....(((((..............--..................))))).......)))..))))))). ( -14.75)
>DroEre_CAF1 23854 85 - 1
CAUGAAUGUUUAAAGUCCGCACUAAACGUUCACCUGAGCACGCUGAUUCAAAACC--------------------CCCAUUCGGCUUCUUCUCAGACAAAUAUUG
..((((((((((..(....)..)))))))))).(((((...(((((.........--------------------.....))))).....))))).......... ( -18.84)
>DroYak_CAF1 25079 83 - 1
-AUGAAUGUUUAAAGUCCGCACUAAACGUUCACCUGAGCACGCUGAUUCAA-ACC--------------------CCCUUUCGGCUUCUUCUCAGACAAAUAUUG
-.((((((((((..(....)..)))))))))).(((((...(((((.....-...--------------------.....))))).....))))).......... ( -18.92)
>consensus
UAUGAAUGUUUAAAGUGCGCACUAAACGUUCACCUGAGCACGCUGAUUCGAAACC___________CCCCCUUCACCCCUUCGGCUUCUUCUCAGACAAAUAUUG
..((((((((((..(....)..)))))))))).(((((...(((((..................................))))).....))))).......... (-15.10 = -15.70 +   0.60)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:50:45 2006