| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 13,747,797 – 13,747,893 |
| Length | 96 |
| Max. P | 0.861725 |
| Location | 13,747,797 – 13,747,893 |
|---|---|
| Length | 96 |
| Sequences | 4 |
| Columns | 97 |
| Reading direction | forward |
| Mean pairwise identity | 79.49 |
| Mean single sequence MFE | -28.80 |
| Consensus MFE | -15.01 |
| Energy contribution | -15.32 |
| Covariance contribution | 0.31 |
| Combinations/Pair | 1.22 |
| Mean z-score | -2.57 |
| Structure conservation index | 0.52 |
| SVM decision value | 0.83 |
| SVM RNA-class probability | 0.861725 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 13747797 96 + 27905053 GCGAGUGUGUGUGGAAGGAGUGAGAG-AGAGAGAGAGGGGAUUUUCUCCUUCGUCUCCACGCGCGCUAUUAAAAUUUUCAUUUUUAUGAUUAUCGCU (((((((((((((((.((((.(((((-((............)))))))))))...)))))))))))...........((((....))))...)))). ( -34.20) >DroSec_CAF1 20875 86 + 1 GCGAAGG---GUGG--------CGGGGGGAGAGAGAGGGGAUUUUCGCCUUCGUCUCCACGCGCGCUAUUAAAAUUUUCAUUUUUAUGAUUAUCGCU ((((..(---((((--------(((.((((((..((((.(.....).))))..))))).).).))))))).......((((....))))...)))). ( -32.10) >DroSim_CAF1 20895 85 + 1 GCGAAGG---GUGG--------CGGG-GGAGAGAGAGGGGAUUUUCGCCUUCGUCUCCACGCGCGCUAUUAAAAUUUUCAUUUUUAUGAUUAUCGCU ((((..(---((((--------((..-(((((..((((.(.....).))))..))))).))).))))..........((((....))))...)))). ( -31.50) >DroEre_CAF1 20799 72 + 1 GCGG-------------------------GAAAACGGGGUAUUUUCGCCUGCGUCUCCACGCGCGCUAUUAAAAUUUUCAUUUUUAUGAUUAUCGCU ((((-------------------------((..(((((((......)))).))).))).)))(((.((.(((((.......)))))....)).))). ( -17.40) >consensus GCGAAGG___GUGG________CGGG_GGAGAGAGAGGGGAUUUUCGCCUUCGUCUCCACGCGCGCUAUUAAAAUUUUCAUUUUUAUGAUUAUCGCU ((((.......................(((((..((((.(.....).))))..)))))...................((((....))))...)))). (-15.01 = -15.32 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:50:44 2006