| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 13,743,735 – 13,743,838 |
| Length | 103 |
| Max. P | 0.680104 |
| Location | 13,743,735 – 13,743,838 |
|---|---|
| Length | 103 |
| Sequences | 3 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 88.02 |
| Mean single sequence MFE | -26.08 |
| Consensus MFE | -23.27 |
| Energy contribution | -23.27 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.65 |
| Structure conservation index | 0.89 |
| SVM decision value | 0.30 |
| SVM RNA-class probability | 0.680104 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 13743735 103 + 27905053 UUAUUCCAUUGCUGAUAGCCUGCUCACGUGCAGUGUCUUCGGCUCGCAACACUCGCACACCCGCAACACUCGCACAGUCGCCGGCACACACAC---------ACACUGGCAC ..........(((((..((((((......)))).))..)))))..((.......((......)).......))......(((((.........---------...))))).. ( -24.14) >DroEre_CAF1 16881 110 + 1 UUAUUCCAUUGCUGAAAGCCUGCUCACGUGCAGUGUCUUCGGCUCACAACACUCGCACACCCGCA-CACUCGCACAACCGCCGGUACACGCA-CACAUGCACACACUGGCAC ..........((((((..(((((......)))).)..))))))...........((......)).-.............((((((....(((-....)))....)))))).. ( -29.20) >DroYak_CAF1 16961 110 + 1 UUAUUCCAUUGCUGAUAGCCUGCUCACGUGCAGUGUCUUCGGCUCACAACACUCGCACACCCGCA-CACUCGCAUACUCGCCGGUACACACA-CACUUGCACUCACUGGCAC ..........(((((..((((((......)))).))..)))))...........((......)).-.............((((((.....((-....)).....)))))).. ( -24.90) >consensus UUAUUCCAUUGCUGAUAGCCUGCUCACGUGCAGUGUCUUCGGCUCACAACACUCGCACACCCGCA_CACUCGCACAAUCGCCGGUACACACA_CAC_UGCACACACUGGCAC ..........(((((..((((((......)))).))..)))))...........((......))...............(((((.....................))))).. (-23.27 = -23.27 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:50:43 2006