| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 13,738,351 – 13,738,450 |
| Length | 99 |
| Max. P | 0.633016 |
| Location | 13,738,351 – 13,738,450 |
|---|---|
| Length | 99 |
| Sequences | 6 |
| Columns | 103 |
| Reading direction | forward |
| Mean pairwise identity | 83.95 |
| Mean single sequence MFE | -27.88 |
| Consensus MFE | -17.11 |
| Energy contribution | -18.03 |
| Covariance contribution | 0.92 |
| Combinations/Pair | 1.17 |
| Mean z-score | -2.95 |
| Structure conservation index | 0.61 |
| SVM decision value | 0.20 |
| SVM RNA-class probability | 0.633016 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 13738351 99 + 27905053 ---GCUCCUGCCCGGCUGAUAAUUGACACUUUCAAUUAGCCAUCGCAAUCAGCAACAAAAGCGGCAA-CAAUGCAAUGUGCCCAGCAGAAGGGAAACCUCAUC ---....((((...((((((((((((.....)))))))((....))..))))).......(.((((.-((......))))))).)))).(((....))).... ( -28.10) >DroSec_CAF1 11644 100 + 1 GCUGCUCCUGCCCGACUGAUAAUUGACACUUUCAAUUAGCCAUCGCAAUCAGCAACAAAAGCGGCAA-CAA--CAAUGUGCCCGGCAGAAGGGAAACCUCAUC .......(((((.(.(((((((((((.....)))))))((....))..))))).......(.((((.-((.--...)))))))))))).(((....))).... ( -27.80) >DroSim_CAF1 11308 100 + 1 GCUGCUCCUGCCCGGCUGAUAAUUGACACUUUCAAUUAGCCAUCGCAAUCAGCAACAAAAGCAGCAA-CAA--CAAUUUGCCCGGCAGAAGGGAAACCUCAUC ((((((..((....((((((((((((.....)))))))((....))..)))))..))..))))))..-...--...(((((...)))))(((....))).... ( -30.50) >DroEre_CAF1 11587 100 + 1 GCCGCUCCUGCCCGGCUGAUAAUUGACACUUUCAAUUAGCCAUCGCAAUCAGCAACAAAAGCGGCCA-CAA--CAAUGCGCCCAGCAGAAGGGAAACCUCAUC ((((((..((....((((((((((((.....)))))))((....))..)))))..))..))))))..-...--...(((.....)))((.((....))))... ( -32.10) >DroYak_CAF1 11573 100 + 1 AGCGCUCCUGCCCCGCUGAUAAUUGACACUUUCAAUUAGCUAUCGCAAUCAGCAACAAAAGCGGCCA-CAA--CAAUGUGCCCAGGAGAAGGGAAACCUCAUC ....((((((....((((((((((((.....)))))))((....))..))))).........(((.(-((.--...)))))))))))).(((....))).... ( -32.40) >DroPer_CAF1 13129 84 + 1 -GCCUUUUUCCCCAGCUGAUAAUUGACGCUUUCAAUUAGCCAUCGCAAUCAGCAGCAGAAGAGCCAAACAG--CAA----------------GAAACCGCAUU -((..(((((..(.((((((((((((.....)))))))((....))..))))).)..)))))((......)--)..----------------......))... ( -16.40) >consensus GCCGCUCCUGCCCGGCUGAUAAUUGACACUUUCAAUUAGCCAUCGCAAUCAGCAACAAAAGCGGCAA_CAA__CAAUGUGCCCAGCAGAAGGGAAACCUCAUC .(((((..((....((((((((((((.....)))))))((....))..)))))..))..))))).........................(((....))).... (-17.11 = -18.03 + 0.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:50:40 2006