Locus 5267

Sequence ID 3R_DroMel_CAF1
Location 13,734,608 – 13,734,698
Length 90
Max. P 0.837530
window8596

overview

Window 6

Location 13,734,608 – 13,734,698
Length 90
Sequences 5
Columns 90
Reading direction reverse
Mean pairwise identity 86.99
Mean single sequence MFE -8.45
Consensus MFE -7.92
Energy contribution -7.88
Covariance contribution -0.04
Combinations/Pair 1.06
Mean z-score -1.53
Structure conservation index 0.94
SVM decision value 0.74
SVM RNA-class probability 0.837530
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 13734608 90 - 27905053
AACAACGUAUUUAUAAAUACUGCAAAACUGCAUUCCAAGCAACCAAACCAUAGAAAAGUUUAUCAAAUCCCCCAAGAAAAGCUUUAAACU
......(((((....)))))((((....))))......................(((((((.((...........)).)))))))..... (  -8.40)
>DroSec_CAF1 7804 82 - 1
AACAACGUAUUUAUAAAUACUGCAAAACUGCAUUCC--------AAACCAUAGAAAAGUUUAUCAAAUCCCCCAAGAAAAGCUUUAAACU
......(((((....)))))((((....))))....--------..........(((((((.((...........)).)))))))..... (  -8.40)
>DroSim_CAF1 7173 82 - 1
AACAACGUAUUUAUAAAUACUGCAAAACUGCAUUCC--------AAACCAUAGAAAAGUUUAUCAAAUCCCCCAAGAAAAGCUUUAAACU
......(((((....)))))((((....))))....--------..........(((((((.((...........)).)))))))..... (  -8.40)
>DroEre_CAF1 7640 89 - 1
AUCAACGUAUGCAUAAAUACUGCGAAACUGCAUUCCCAGCAACCGAACCCGAGAAAAGUUUAUCAAAUCC-CCAAGAAAAGCUUUAAAUU
.....((..(((........((((....))))......)))..)).........(((((((.((......-....)).)))))))..... (  -9.34)
>DroYak_CAF1 7659 76 - 1
AACAACGUAUUUAUAAAUACUGCGAAACUGCAUUCC--------------AAGAAAAGUUUAUCAAAUCCCCCAAGAAAAGCUUUAAAUU
......(((((....)))))((((....))))....--------------....(((((((.((...........)).)))))))..... (  -7.70)
>consensus
AACAACGUAUUUAUAAAUACUGCAAAACUGCAUUCC________AAACCAUAGAAAAGUUUAUCAAAUCCCCCAAGAAAAGCUUUAAACU
......(((((....)))))((((....))))......................(((((((.((...........)).)))))))..... ( -7.92 =  -7.88 +  -0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:50:39 2006