| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 13,730,836 – 13,730,927 |
| Length | 91 |
| Max. P | 0.750456 |
| Location | 13,730,836 – 13,730,927 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 103 |
| Reading direction | reverse |
| Mean pairwise identity | 80.35 |
| Mean single sequence MFE | -37.07 |
| Consensus MFE | -20.71 |
| Energy contribution | -20.91 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.35 |
| Mean z-score | -2.19 |
| Structure conservation index | 0.56 |
| SVM decision value | 0.47 |
| SVM RNA-class probability | 0.750456 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 13730836 91 - 27905053 ------CAUGGCCAGUCAG---UGCCGCAGAUGG---GCGGCUACCAGAAGCCACCACCUCUGACUCGCAACCUGACCAUCAGCGGUGGUCAUGCGAUGGACU ------...((((((((((---.(((.......)---))((((......)))).......)))))(((((...(((((((.....))))))))))))))).)) ( -35.00) >DroVir_CAF1 189 97 - 1 CAAAUCCAUCAGCAGCCAU------CGCAGGUGGGCGGUGGCUACCAGAAACCGCCACCACUGACCCGUAAUCUGACGAUCAGCGGUGGCCAUGCCAUGGACG ....(((((..((((((((------(((.(((.((.((((((...........)))))).)).)))(((......)))....))))))))..))).))))).. ( -42.90) >DroSec_CAF1 4099 91 - 1 ------CAUGGCCAGCCAG---UGCCGCAGAUGG---GCGGCUACCAGAAGCCGCCACCUCUGACCCGCAACCUUACCAUCAGCGGUGGUCAUGCGAUGGACU ------((((((((.....---.....((((.((---((((((......))))))).).))))..((((.............))))))))))))......... ( -35.02) >DroSim_CAF1 3485 91 - 1 ------CAUGGCCAGCCAG---UGCCGCAGAUGG---GCGGCUACCAGAAGCCGCCACCUCUGACCCGCAACCUGACCAUCAGCGGUGGUCAUGCGAUGGACU ------..(((....)))(---(.(((((((.((---((((((......))))))).).))))...((((...(((((((.....))))))))))).))))). ( -39.40) >DroYak_CAF1 3781 88 - 1 ------CAUGGCCAGCCAA---UGCAG---AUGG---GCGGCUACCAGAAGCCGCCACCCCUGACCCGCAACCUGACCAUCAGCGGUGGUCAUGCGAUGGACU ------..(((....))).---..(((---..((---((((((......))))))).)..))).((((((...(((((((.....)))))))))))..))... ( -35.10) >DroAna_CAF1 3881 94 - 1 ------CACGGGCAGCAAGGCAUGUCGCAAAUGG---GGGGCUACCAGAAGCCUCCUCCCUUGACUCGGAACCUAACAAUUUCCGGAGGACAUGCCAUGGACA ------.........((.((((((((.(((..((---((((((......))))))))...))).(((((((.........)))).))))))))))).)).... ( -35.00) >consensus ______CAUGGCCAGCCAG___UGCCGCAGAUGG___GCGGCUACCAGAAGCCGCCACCUCUGACCCGCAACCUGACCAUCAGCGGUGGUCAUGCGAUGGACU .......................(((((.........)))))..(((...((.((((((.((((...............)))).))))))...))..)))... (-20.71 = -20.91 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:50:38 2006